Hb_092458_010

Information

Type -
Description -
Location Contig92458: 1647-3289
Sequence    

Annotation

kegg
ID rcu:RCOM_0037070
description calmodulin binding protein, putative
nr
ID XP_002531590.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T021
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0037070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092458_010 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_003077_060 0.1006285632 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
3 Hb_002107_110 0.1064330574 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
4 Hb_005433_030 0.1229056562 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
5 Hb_002615_010 0.1389583607 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
6 Hb_018633_010 0.1423895383 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_002010_020 0.1480282407 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
8 Hb_168509_020 0.1602580791 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
9 Hb_000177_130 0.1629929728 - - wall-associated kinase, putative [Ricinus communis]
10 Hb_086614_010 0.1636981197 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
11 Hb_000111_240 0.1640416792 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
12 Hb_001635_230 0.1650702442 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_000359_260 0.1682857171 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
14 Hb_140000_010 0.1708623731 - - receptor-kinase, putative [Ricinus communis]
15 Hb_002279_020 0.1716670179 - - hypothetical protein POPTR_0009s03100g [Populus trichocarpa]
16 Hb_101034_020 0.1742939713 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
17 Hb_007416_170 0.1743976775 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
18 Hb_001141_190 0.1779606744 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004880_100 0.179387847 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
20 Hb_006925_060 0.1800628954 - - hypothetical protein JCGZ_20651 [Jatropha curcas]

Gene co-expression network

sample Hb_092458_010 Hb_092458_010 Hb_003077_060 Hb_003077_060 Hb_092458_010--Hb_003077_060 Hb_002107_110 Hb_002107_110 Hb_092458_010--Hb_002107_110 Hb_005433_030 Hb_005433_030 Hb_092458_010--Hb_005433_030 Hb_002615_010 Hb_002615_010 Hb_092458_010--Hb_002615_010 Hb_018633_010 Hb_018633_010 Hb_092458_010--Hb_018633_010 Hb_002010_020 Hb_002010_020 Hb_092458_010--Hb_002010_020 Hb_003077_060--Hb_002107_110 Hb_005867_030 Hb_005867_030 Hb_003077_060--Hb_005867_030 Hb_007416_170 Hb_007416_170 Hb_003077_060--Hb_007416_170 Hb_001619_020 Hb_001619_020 Hb_003077_060--Hb_001619_020 Hb_000237_070 Hb_000237_070 Hb_003077_060--Hb_000237_070 Hb_000359_260 Hb_000359_260 Hb_002107_110--Hb_000359_260 Hb_000495_050 Hb_000495_050 Hb_002107_110--Hb_000495_050 Hb_001635_230 Hb_001635_230 Hb_002107_110--Hb_001635_230 Hb_002107_110--Hb_002615_010 Hb_005433_030--Hb_002615_010 Hb_002374_360 Hb_002374_360 Hb_005433_030--Hb_002374_360 Hb_005433_030--Hb_002107_110 Hb_042098_010 Hb_042098_010 Hb_005433_030--Hb_042098_010 Hb_006925_060 Hb_006925_060 Hb_005433_030--Hb_006925_060 Hb_002615_010--Hb_001635_230 Hb_002471_190 Hb_002471_190 Hb_002615_010--Hb_002471_190 Hb_158111_010 Hb_158111_010 Hb_002615_010--Hb_158111_010 Hb_002391_020 Hb_002391_020 Hb_002615_010--Hb_002391_020 Hb_002615_010--Hb_002010_020 Hb_000111_240 Hb_000111_240 Hb_018633_010--Hb_000111_240 Hb_140000_010 Hb_140000_010 Hb_018633_010--Hb_140000_010 Hb_086614_010 Hb_086614_010 Hb_018633_010--Hb_086614_010 Hb_001581_040 Hb_001581_040 Hb_018633_010--Hb_001581_040 Hb_005599_020 Hb_005599_020 Hb_018633_010--Hb_005599_020 Hb_077694_010 Hb_077694_010 Hb_018633_010--Hb_077694_010 Hb_154466_010 Hb_154466_010 Hb_002010_020--Hb_154466_010 Hb_008202_020 Hb_008202_020 Hb_002010_020--Hb_008202_020 Hb_002010_020--Hb_002471_190 Hb_002010_020--Hb_002391_020 Hb_004899_360 Hb_004899_360 Hb_002010_020--Hb_004899_360 Hb_001619_140 Hb_001619_140 Hb_002010_020--Hb_001619_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.36207 1.45087 0.130817 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.422387 0.314738

CAGE analysis