Hb_092462_020

Information

Type transcription factor
Description TF Family: G2-like
Location Contig92462: 32157-33122
Sequence    

Annotation

kegg
ID rcu:RCOM_1632080
description DNA binding protein, putative
nr
ID XP_002517275.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SNB4
description Transcription factor LUX OS=Arabidopsis thaliana GN=LUX PE=1 SV=1
trembl
ID B9RU56
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1632080 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor pcl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62578: 31299-33273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092462_020 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_002184_110 0.079498023 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
3 Hb_004724_270 0.1014107048 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
4 Hb_000729_030 0.1017581919 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
5 Hb_002043_030 0.1031655773 - - hypothetical protein RCOM_1486170 [Ricinus communis]
6 Hb_000010_190 0.1034088305 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
7 Hb_000161_130 0.1107881553 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
8 Hb_000069_380 0.1108781006 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
9 Hb_000239_040 0.1118845984 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
10 Hb_005211_180 0.1124953679 - - Transmembrane protein TPARL, putative [Ricinus communis]
11 Hb_003038_240 0.1135450116 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006478_040 0.1151569399 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
13 Hb_000059_380 0.1156746054 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
14 Hb_000336_150 0.1174822898 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
15 Hb_006153_110 0.1193271754 - - dimethylaniline monooxygenase, putative [Ricinus communis]
16 Hb_003124_150 0.1209489867 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
17 Hb_000958_110 0.1216586644 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
18 Hb_010368_010 0.1220316151 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
19 Hb_000261_020 0.1238130262 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
20 Hb_002704_070 0.1250547467 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]

Gene co-expression network

sample Hb_092462_020 Hb_092462_020 Hb_002184_110 Hb_002184_110 Hb_092462_020--Hb_002184_110 Hb_004724_270 Hb_004724_270 Hb_092462_020--Hb_004724_270 Hb_000729_030 Hb_000729_030 Hb_092462_020--Hb_000729_030 Hb_002043_030 Hb_002043_030 Hb_092462_020--Hb_002043_030 Hb_000010_190 Hb_000010_190 Hb_092462_020--Hb_000010_190 Hb_000161_130 Hb_000161_130 Hb_092462_020--Hb_000161_130 Hb_011930_020 Hb_011930_020 Hb_002184_110--Hb_011930_020 Hb_003142_030 Hb_003142_030 Hb_002184_110--Hb_003142_030 Hb_001307_220 Hb_001307_220 Hb_002184_110--Hb_001307_220 Hb_006478_040 Hb_006478_040 Hb_002184_110--Hb_006478_040 Hb_002184_110--Hb_000729_030 Hb_005211_180 Hb_005211_180 Hb_004724_270--Hb_005211_180 Hb_008013_050 Hb_008013_050 Hb_004724_270--Hb_008013_050 Hb_010368_010 Hb_010368_010 Hb_004724_270--Hb_010368_010 Hb_005245_080 Hb_005245_080 Hb_004724_270--Hb_005245_080 Hb_003124_150 Hb_003124_150 Hb_004724_270--Hb_003124_150 Hb_000869_080 Hb_000869_080 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_000336_150 Hb_000336_150 Hb_000729_030--Hb_000336_150 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_000729_030--Hb_003124_150 Hb_000729_030--Hb_010368_010 Hb_007810_010 Hb_007810_010 Hb_002043_030--Hb_007810_010 Hb_002311_360 Hb_002311_360 Hb_002043_030--Hb_002311_360 Hb_000309_130 Hb_000309_130 Hb_002043_030--Hb_000309_130 Hb_003038_240 Hb_003038_240 Hb_002043_030--Hb_003038_240 Hb_002704_070 Hb_002704_070 Hb_002043_030--Hb_002704_070 Hb_000010_190--Hb_000336_150 Hb_001470_030 Hb_001470_030 Hb_000010_190--Hb_001470_030 Hb_006153_110 Hb_006153_110 Hb_000010_190--Hb_006153_110 Hb_001723_020 Hb_001723_020 Hb_000010_190--Hb_001723_020 Hb_004324_090 Hb_004324_090 Hb_000010_190--Hb_004324_090 Hb_000010_190--Hb_006478_040 Hb_000310_020 Hb_000310_020 Hb_000161_130--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000161_130--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000161_130--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_000161_130--Hb_017987_050 Hb_000847_060 Hb_000847_060 Hb_000161_130--Hb_000847_060 Hb_000161_130--Hb_004324_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.75675 11.3372 8.23584 4.99141 4.08826 5.02831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5522 12.6517 7.41313 4.94148 11.4646

CAGE analysis