Hb_092516_010

Information

Type -
Description -
Location Contig92516: 4013-7856
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11940g
description POPTRDRAFT_665822; hypothetical protein
nr
ID KDP31787.1
description hypothetical protein JCGZ_12248 [Jatropha curcas]
swissprot
ID P67055
description Demethylmenaquinone methyltransferase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=menG PE=3 SV=1
trembl
ID A0A067K6R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12248 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62607: 4094-7803 , PASA_asmbl_62608: 4026-7764 , PASA_asmbl_62609: 4026-7764 , PASA_asmbl_62610: 4026-7764 , PASA_asmbl_62611: 4026-7764 , PASA_asmbl_62612: 4026-7764 , PASA_asmbl_62613: 4026-7764
cDNA
(Sanger)
(ID:Location)		 008_P16.ab1: 5691-7805 , 044_B01.ab1: 5625-7797 , 045_E18.ab1: 5626-7797

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092516_010 0.0 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
2 Hb_000358_160 0.0614988803 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
3 Hb_000294_020 0.0710697373 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
4 Hb_021443_060 0.0745532194 - - PTH-1 family protein [Populus trichocarpa]
5 Hb_110266_010 0.0765686342 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
6 Hb_000313_250 0.0789182096 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
7 Hb_001655_080 0.0811680093 - - Purple acid phosphatase precursor, putative [Ricinus communis]
8 Hb_015044_010 0.0854402029 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
9 Hb_000282_020 0.086690533 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
10 Hb_001014_240 0.0870187179 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
11 Hb_022167_010 0.0895060196 - - Kinase, putative isoform 2 [Theobroma cacao]
12 Hb_002007_120 0.0905678996 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
13 Hb_000236_130 0.090933901 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
14 Hb_000345_400 0.0923517659 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000962_090 0.0932684706 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
16 Hb_000928_100 0.0940828772 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_002710_040 0.0992867018 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
18 Hb_000890_170 0.099680746 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
19 Hb_019053_040 0.1006330129 - - cytochrome P450, putative [Ricinus communis]
20 Hb_023582_010 0.1007444834 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_092516_010 Hb_092516_010 Hb_000358_160 Hb_000358_160 Hb_092516_010--Hb_000358_160 Hb_000294_020 Hb_000294_020 Hb_092516_010--Hb_000294_020 Hb_021443_060 Hb_021443_060 Hb_092516_010--Hb_021443_060 Hb_110266_010 Hb_110266_010 Hb_092516_010--Hb_110266_010 Hb_000313_250 Hb_000313_250 Hb_092516_010--Hb_000313_250 Hb_001655_080 Hb_001655_080 Hb_092516_010--Hb_001655_080 Hb_000358_160--Hb_001655_080 Hb_027684_010 Hb_027684_010 Hb_000358_160--Hb_027684_010 Hb_000358_160--Hb_021443_060 Hb_000358_160--Hb_000313_250 Hb_000345_400 Hb_000345_400 Hb_000358_160--Hb_000345_400 Hb_003777_090 Hb_003777_090 Hb_000294_020--Hb_003777_090 Hb_000483_470 Hb_000483_470 Hb_000294_020--Hb_000483_470 Hb_000236_130 Hb_000236_130 Hb_000294_020--Hb_000236_130 Hb_000928_100 Hb_000928_100 Hb_000294_020--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000294_020--Hb_022167_010 Hb_021443_060--Hb_000313_250 Hb_174899_010 Hb_174899_010 Hb_021443_060--Hb_174899_010 Hb_021443_060--Hb_027684_010 Hb_023582_010 Hb_023582_010 Hb_021443_060--Hb_023582_010 Hb_002007_120 Hb_002007_120 Hb_110266_010--Hb_002007_120 Hb_110266_010--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_110266_010--Hb_048141_050 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_000313_250--Hb_002007_120 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_001655_080--Hb_027684_010 Hb_046590_010 Hb_046590_010 Hb_001655_080--Hb_046590_010 Hb_001269_060 Hb_001269_060 Hb_001655_080--Hb_001269_060 Hb_001638_190 Hb_001638_190 Hb_001655_080--Hb_001638_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208076 5.79218 70.1739 19.9145 0.0411142 0.0128375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.400245 0.236155 0.295123 2.78828 43.6429

CAGE analysis