Hb_092655_010

Information

Type -
Description -
Location Contig92655: 15453-18540
Sequence    

Annotation

kegg
ID rcu:RCOM_1013020
description hypothetical protein
nr
ID XP_012092420.1
description PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21523 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sodium calcium exchanger family protein calcium-binding ef hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092655_010 0.0 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
2 Hb_025107_010 0.0483343348 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
3 Hb_005043_040 0.0558639209 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
4 Hb_000024_100 0.055998615 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
5 Hb_000155_130 0.0592648856 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000480_020 0.0663314779 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000594_010 0.0701773055 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
8 Hb_009164_010 0.0867314173 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
9 Hb_019953_010 0.0992385714 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
10 Hb_151052_010 0.1043387908 - - -
11 Hb_005653_010 0.1044278059 - - CEN-like protein 2 [Jatropha curcas]
12 Hb_002636_170 0.1045729635 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
13 Hb_005841_070 0.1091038301 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000696_130 0.1099210748 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_004030_040 0.1196313647 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
16 Hb_002757_030 0.1219019158 - - unnamed protein product [Vitis vinifera]
17 Hb_003788_030 0.1263385376 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_002757_040 0.128241869 - - -
19 Hb_002660_180 0.1285557534 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000422_090 0.12860849 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_092655_010 Hb_092655_010 Hb_025107_010 Hb_025107_010 Hb_092655_010--Hb_025107_010 Hb_005043_040 Hb_005043_040 Hb_092655_010--Hb_005043_040 Hb_000024_100 Hb_000024_100 Hb_092655_010--Hb_000024_100 Hb_000155_130 Hb_000155_130 Hb_092655_010--Hb_000155_130 Hb_000480_020 Hb_000480_020 Hb_092655_010--Hb_000480_020 Hb_000594_010 Hb_000594_010 Hb_092655_010--Hb_000594_010 Hb_025107_010--Hb_005043_040 Hb_025107_010--Hb_000024_100 Hb_151052_010 Hb_151052_010 Hb_025107_010--Hb_151052_010 Hb_005653_010 Hb_005653_010 Hb_025107_010--Hb_005653_010 Hb_025107_010--Hb_000594_010 Hb_005043_040--Hb_000024_100 Hb_005043_040--Hb_151052_010 Hb_005043_040--Hb_005653_010 Hb_000500_250 Hb_000500_250 Hb_005043_040--Hb_000500_250 Hb_000024_100--Hb_151052_010 Hb_000024_100--Hb_005653_010 Hb_000024_100--Hb_000500_250 Hb_000155_130--Hb_000480_020 Hb_005841_070 Hb_005841_070 Hb_000155_130--Hb_005841_070 Hb_009164_010 Hb_009164_010 Hb_000155_130--Hb_009164_010 Hb_002757_040 Hb_002757_040 Hb_000155_130--Hb_002757_040 Hb_000155_130--Hb_000594_010 Hb_000480_020--Hb_005841_070 Hb_000480_020--Hb_009164_010 Hb_000480_020--Hb_002757_040 Hb_000480_020--Hb_000594_010 Hb_000594_010--Hb_009164_010 Hb_019953_010 Hb_019953_010 Hb_000594_010--Hb_019953_010 Hb_002636_170 Hb_002636_170 Hb_000594_010--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000594_010--Hb_000696_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.151829 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0449233

CAGE analysis