Hb_093084_040

Information

Type transcription factor
Description TF Family: LOB
Location Contig93084: 29307-29864
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09370g
description POPTRDRAFT_252251; hypothetical protein
nr
ID XP_002322187.2
description hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
swissprot
ID Q9FML4
description Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1
trembl
ID B9IEW9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09370g PE=4 SV=2
Gene Ontology
ID GO:0004088
description protein lateral organ boundaries

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093084_040 0.0 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
2 Hb_031546_010 0.0709804931 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
3 Hb_092416_020 0.0723096637 - - protein with unknown function [Ricinus communis]
4 Hb_001946_420 0.0730852248 - - protein with unknown function [Ricinus communis]
5 Hb_000056_140 0.0785664853 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
6 Hb_001688_040 0.0800650644 - - conserved hypothetical protein [Ricinus communis]
7 Hb_041188_010 0.0843343933 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
8 Hb_025526_110 0.086167882 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
9 Hb_020712_020 0.0914145289 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
10 Hb_005276_180 0.0946577365 - - hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
11 Hb_000355_020 0.0974255043 - - -
12 Hb_001278_010 0.0990439416 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000645_040 0.103602154 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_003058_090 0.1132634507 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
15 Hb_154146_010 0.1140117181 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
16 Hb_000269_050 0.1160323849 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
17 Hb_001304_150 0.1162062532 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_106677_010 0.120450641 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
19 Hb_003494_100 0.1205166146 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
20 Hb_050786_010 0.1237763624 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]

Gene co-expression network

sample Hb_093084_040 Hb_093084_040 Hb_031546_010 Hb_031546_010 Hb_093084_040--Hb_031546_010 Hb_092416_020 Hb_092416_020 Hb_093084_040--Hb_092416_020 Hb_001946_420 Hb_001946_420 Hb_093084_040--Hb_001946_420 Hb_000056_140 Hb_000056_140 Hb_093084_040--Hb_000056_140 Hb_001688_040 Hb_001688_040 Hb_093084_040--Hb_001688_040 Hb_041188_010 Hb_041188_010 Hb_093084_040--Hb_041188_010 Hb_031546_010--Hb_092416_020 Hb_031546_010--Hb_001946_420 Hb_031546_010--Hb_000056_140 Hb_031546_010--Hb_001688_040 Hb_031546_010--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_031546_010--Hb_025526_110 Hb_092416_020--Hb_001946_420 Hb_092416_020--Hb_000056_140 Hb_092416_020--Hb_001688_040 Hb_005276_180 Hb_005276_180 Hb_092416_020--Hb_005276_180 Hb_092416_020--Hb_041188_010 Hb_001946_420--Hb_000056_140 Hb_001946_420--Hb_001688_040 Hb_001946_420--Hb_005276_180 Hb_001946_420--Hb_041188_010 Hb_000056_140--Hb_001688_040 Hb_000056_140--Hb_005276_180 Hb_001688_040--Hb_005276_180 Hb_041188_010--Hb_025526_110 Hb_020712_020 Hb_020712_020 Hb_041188_010--Hb_020712_020 Hb_000355_020 Hb_000355_020 Hb_041188_010--Hb_000355_020 Hb_001278_010 Hb_001278_010 Hb_041188_010--Hb_001278_010 Hb_154146_010 Hb_154146_010 Hb_041188_010--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_041188_010--Hb_001304_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0739677 7.01272 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.291936 0

CAGE analysis