Hb_093084_050

Information

Type -
Description -
Location Contig93084: 37876-41778
Sequence    

Annotation

kegg
ID tcc:TCM_012189
description hypothetical protein
nr
ID XP_012080525.1
description PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7N1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11424 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62847: 41260-41538 , PASA_asmbl_62849: 38134-46540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093084_050 0.0 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
2 Hb_000656_110 0.0448014726 - - nucleolysin tia-1, putative [Ricinus communis]
3 Hb_001102_140 0.0692120693 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
4 Hb_001898_220 0.0786819001 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
5 Hb_003057_100 0.0831759129 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
6 Hb_000041_050 0.0863576692 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
7 Hb_000445_420 0.0868465551 - - protein transporter, putative [Ricinus communis]
8 Hb_005054_290 0.0873525196 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
9 Hb_000953_020 0.0898156154 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
10 Hb_011883_010 0.0929398477 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
11 Hb_000329_630 0.0940438094 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
12 Hb_000700_110 0.0945388623 - - Vesicle-associated membrane protein, putative [Ricinus communis]
13 Hb_000705_210 0.0946541014 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
14 Hb_001635_060 0.0967643852 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
15 Hb_001439_100 0.0969547483 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
16 Hb_000003_480 0.0986078529 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
17 Hb_002685_110 0.0986139859 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
18 Hb_005305_080 0.0986680307 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
19 Hb_000125_190 0.0996692806 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
20 Hb_000035_320 0.1003721873 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]

Gene co-expression network

sample Hb_093084_050 Hb_093084_050 Hb_000656_110 Hb_000656_110 Hb_093084_050--Hb_000656_110 Hb_001102_140 Hb_001102_140 Hb_093084_050--Hb_001102_140 Hb_001898_220 Hb_001898_220 Hb_093084_050--Hb_001898_220 Hb_003057_100 Hb_003057_100 Hb_093084_050--Hb_003057_100 Hb_000041_050 Hb_000041_050 Hb_093084_050--Hb_000041_050 Hb_000445_420 Hb_000445_420 Hb_093084_050--Hb_000445_420 Hb_000656_110--Hb_000041_050 Hb_000656_110--Hb_001102_140 Hb_000700_110 Hb_000700_110 Hb_000656_110--Hb_000700_110 Hb_003125_010 Hb_003125_010 Hb_000656_110--Hb_003125_010 Hb_001369_690 Hb_001369_690 Hb_000656_110--Hb_001369_690 Hb_106724_020 Hb_106724_020 Hb_001102_140--Hb_106724_020 Hb_005054_290 Hb_005054_290 Hb_001102_140--Hb_005054_290 Hb_000000_460 Hb_000000_460 Hb_001102_140--Hb_000000_460 Hb_002685_110 Hb_002685_110 Hb_001102_140--Hb_002685_110 Hb_001635_060 Hb_001635_060 Hb_001898_220--Hb_001635_060 Hb_000000_250 Hb_000000_250 Hb_001898_220--Hb_000000_250 Hb_189003_080 Hb_189003_080 Hb_001898_220--Hb_189003_080 Hb_002026_180 Hb_002026_180 Hb_001898_220--Hb_002026_180 Hb_001898_220--Hb_000041_050 Hb_000032_270 Hb_000032_270 Hb_003057_100--Hb_000032_270 Hb_032202_190 Hb_032202_190 Hb_003057_100--Hb_032202_190 Hb_029866_090 Hb_029866_090 Hb_003057_100--Hb_029866_090 Hb_005305_080 Hb_005305_080 Hb_003057_100--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_003057_100--Hb_000510_130 Hb_000059_330 Hb_000059_330 Hb_003057_100--Hb_000059_330 Hb_000041_050--Hb_000700_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_001833_110 Hb_001833_110 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330 Hb_000445_420--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_000445_420--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000445_420--Hb_002016_110 Hb_004055_030 Hb_004055_030 Hb_000445_420--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_000445_420--Hb_006922_100 Hb_010931_120 Hb_010931_120 Hb_000445_420--Hb_010931_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13771 1.16755 0.52709 1.1824 1.10877 1.85006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70303 1.31424 1.99533 0.94766 0.712931

CAGE analysis