Hb_093084_060

Information

Type -
Description -
Location Contig93084: 43694-48125
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09390g
description POPTRDRAFT_808009; hypothetical protein
nr
ID XP_012079996.1
description PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
swissprot
ID Q9C7V5
description Putative pentatricopeptide repeat-containing protein At1g64310 OS=Arabidopsis thaliana GN=PCMP-E65 PE=3 SV=1
trembl
ID A0A067K495
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62844: 44405-44910 , PASA_asmbl_62846: 45708-45972 , PASA_asmbl_62849: 38134-46540 , PASA_asmbl_62850: 46544-46678 , PASA_asmbl_62851: 46791-46976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093084_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
2 Hb_002400_310 0.070487841 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
3 Hb_181235_010 0.0719290953 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
4 Hb_000373_150 0.0725742439 - - PREDICTED: protein FAM188A [Jatropha curcas]
5 Hb_000125_170 0.0824574712 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
6 Hb_000487_290 0.0829813733 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
7 Hb_004837_040 0.0852796008 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
8 Hb_000629_010 0.0858527536 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
9 Hb_004785_060 0.0868453317 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
10 Hb_007163_090 0.0874963186 - - PREDICTED: protein spt2-like [Jatropha curcas]
11 Hb_000227_240 0.0881564474 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
12 Hb_012807_050 0.0888877025 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
13 Hb_123352_020 0.0893004809 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
14 Hb_005731_130 0.0914494007 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
15 Hb_000059_210 0.0923915696 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006586_050 0.0931062048 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
17 Hb_004767_050 0.0933814361 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
18 Hb_000291_110 0.0936500346 - - eukaryotic translation initiation factor [Hevea brasiliensis]
19 Hb_000521_260 0.0937710861 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
20 Hb_001226_030 0.0938442125 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_093084_060 Hb_093084_060 Hb_002400_310 Hb_002400_310 Hb_093084_060--Hb_002400_310 Hb_181235_010 Hb_181235_010 Hb_093084_060--Hb_181235_010 Hb_000373_150 Hb_000373_150 Hb_093084_060--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_093084_060--Hb_000125_170 Hb_000487_290 Hb_000487_290 Hb_093084_060--Hb_000487_290 Hb_004837_040 Hb_004837_040 Hb_093084_060--Hb_004837_040 Hb_007101_170 Hb_007101_170 Hb_002400_310--Hb_007101_170 Hb_000244_220 Hb_000244_220 Hb_002400_310--Hb_000244_220 Hb_000318_510 Hb_000318_510 Hb_002400_310--Hb_000318_510 Hb_006586_050 Hb_006586_050 Hb_002400_310--Hb_006586_050 Hb_001143_160 Hb_001143_160 Hb_002400_310--Hb_001143_160 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220 Hb_000373_150--Hb_000125_170 Hb_000521_260 Hb_000521_260 Hb_000373_150--Hb_000521_260 Hb_001780_020 Hb_001780_020 Hb_000373_150--Hb_001780_020 Hb_003052_140 Hb_003052_140 Hb_000373_150--Hb_003052_140 Hb_003464_050 Hb_003464_050 Hb_000373_150--Hb_003464_050 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_000125_170--Hb_003052_140 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_007416_180 Hb_007416_180 Hb_000125_170--Hb_007416_180 Hb_000125_170--Hb_003464_050 Hb_005188_050 Hb_005188_050 Hb_000487_290--Hb_005188_050 Hb_123352_020 Hb_123352_020 Hb_000487_290--Hb_123352_020 Hb_000827_070 Hb_000827_070 Hb_000487_290--Hb_000827_070 Hb_005731_030 Hb_005731_030 Hb_000487_290--Hb_005731_030 Hb_000025_360 Hb_000025_360 Hb_000487_290--Hb_000025_360 Hb_004724_060 Hb_004724_060 Hb_000487_290--Hb_004724_060 Hb_004837_040--Hb_000062_240 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_002496_030 Hb_002496_030 Hb_004837_040--Hb_002496_030 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8672 2.29548 0.671894 1.13523 2.02004 2.62336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47513 1.8388 2.19155 1.77359 0.437324

CAGE analysis