Hb_093084_070

Information

Type desease resistance
Description Gene Name: Baculo_PEP_C
Location Contig93084: 44002-46056
Sequence    

Annotation

kegg
ID rcu:RCOM_1509380
description Disease resistance protein RPP13, putative (EC:3.1.3.16)
nr
ID XP_002511340.1
description Disease resistance protein RPP13, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9RAW5
description Disease resistance protein RPP13, putative OS=Ricinus communis GN=RCOM_1509380 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62845: 45014-45565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093084_070 0.0 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
2 Hb_000236_220 0.0417398127 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
3 Hb_003373_040 0.0436315272 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
4 Hb_000236_410 0.0706420103 - - Paramyosin, putative [Ricinus communis]
5 Hb_001055_030 0.0816381512 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
6 Hb_000061_490 0.0835597945 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
7 Hb_074969_010 0.0846362978 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
8 Hb_008103_060 0.0851451641 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
9 Hb_000322_150 0.0859478265 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
10 Hb_007894_130 0.086996332 - - hypothetical protein RCOM_0584960 [Ricinus communis]
11 Hb_002890_090 0.0876664462 - - Auxin response factor 1 [Glycine soja]
12 Hb_000140_070 0.0880711558 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
13 Hb_002043_140 0.0884786001 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_000622_250 0.0888251293 - - atpob1, putative [Ricinus communis]
15 Hb_000941_130 0.0894185483 - - gamma-tubulin complex component, putative [Ricinus communis]
16 Hb_000780_170 0.0903887 - - PREDICTED: OBERON-like protein [Jatropha curcas]
17 Hb_157966_010 0.0919318622 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
18 Hb_010712_090 0.092336083 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
19 Hb_000441_070 0.0926035069 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
20 Hb_004480_040 0.0927627974 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_093084_070 Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_093084_070--Hb_000236_220 Hb_003373_040 Hb_003373_040 Hb_093084_070--Hb_003373_040 Hb_000236_410 Hb_000236_410 Hb_093084_070--Hb_000236_410 Hb_001055_030 Hb_001055_030 Hb_093084_070--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_000264_080 Hb_000264_080 Hb_000061_490--Hb_000264_080 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_004410_070 Hb_004410_070 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_009771_100 Hb_009771_100 Hb_000061_490--Hb_009771_100 Hb_000563_640 Hb_000563_640 Hb_074969_010--Hb_000563_640 Hb_002107_070 Hb_002107_070 Hb_074969_010--Hb_002107_070 Hb_000922_370 Hb_000922_370 Hb_074969_010--Hb_000922_370 Hb_074969_010--Hb_000236_220 Hb_001454_280 Hb_001454_280 Hb_074969_010--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_074969_010--Hb_006252_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.67346 9.17055 2.27441 3.69687 4.68189 5.31412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47473 2.92943 3.13927 4.08491 1.89519

CAGE analysis