Hb_093218_010

Information

Type -
Description -
Location Contig93218: 2746-3090
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05220g
description hypothetical protein
nr
ID XP_006368558.1
description hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
swissprot
ID C0LGU7
description Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1
trembl
ID U5GV37
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s05220g PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093218_010 0.0 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
2 Hb_000714_060 0.037526226 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
3 Hb_032260_060 0.076518474 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
4 Hb_001104_020 0.0816497066 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000951_090 0.0901529124 - - Oligopeptide transporter, putative [Ricinus communis]
6 Hb_033772_060 0.0943004857 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005892_040 0.1003379225 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
8 Hb_015001_030 0.1007198329 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
9 Hb_001473_060 0.1083618932 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
10 Hb_000732_220 0.1111218054 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
11 Hb_029639_030 0.111698852 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
12 Hb_004330_040 0.1135553867 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008175_050 0.1162301213 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
14 Hb_000152_880 0.1175733291 - - -
15 Hb_005731_070 0.1186659822 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000152_120 0.1189378325 - - alpha-l-fucosidase, putative [Ricinus communis]
17 Hb_000011_370 0.1198732584 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
18 Hb_007290_050 0.1224442948 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
19 Hb_002805_180 0.122515165 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004162_320 0.1233996827 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_093218_010 Hb_093218_010 Hb_000714_060 Hb_000714_060 Hb_093218_010--Hb_000714_060 Hb_032260_060 Hb_032260_060 Hb_093218_010--Hb_032260_060 Hb_001104_020 Hb_001104_020 Hb_093218_010--Hb_001104_020 Hb_000951_090 Hb_000951_090 Hb_093218_010--Hb_000951_090 Hb_033772_060 Hb_033772_060 Hb_093218_010--Hb_033772_060 Hb_005892_040 Hb_005892_040 Hb_093218_010--Hb_005892_040 Hb_000714_060--Hb_032260_060 Hb_000714_060--Hb_000951_090 Hb_005731_070 Hb_005731_070 Hb_000714_060--Hb_005731_070 Hb_001473_060 Hb_001473_060 Hb_000714_060--Hb_001473_060 Hb_000714_060--Hb_001104_020 Hb_004330_040 Hb_004330_040 Hb_032260_060--Hb_004330_040 Hb_032260_060--Hb_001473_060 Hb_003754_020 Hb_003754_020 Hb_032260_060--Hb_003754_020 Hb_000310_110 Hb_000310_110 Hb_032260_060--Hb_000310_110 Hb_000732_220 Hb_000732_220 Hb_001104_020--Hb_000732_220 Hb_000152_120 Hb_000152_120 Hb_001104_020--Hb_000152_120 Hb_001104_020--Hb_005892_040 Hb_001104_020--Hb_000951_090 Hb_019570_010 Hb_019570_010 Hb_001104_020--Hb_019570_010 Hb_000951_090--Hb_000152_120 Hb_029639_030 Hb_029639_030 Hb_000951_090--Hb_029639_030 Hb_002805_180 Hb_002805_180 Hb_000951_090--Hb_002805_180 Hb_007894_080 Hb_007894_080 Hb_033772_060--Hb_007894_080 Hb_000152_880 Hb_000152_880 Hb_033772_060--Hb_000152_880 Hb_033772_060--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_033772_060--Hb_000181_220 Hb_033772_060--Hb_005892_040 Hb_003506_010 Hb_003506_010 Hb_005892_040--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_005892_040--Hb_004162_320 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_001405_040 Hb_001405_040 Hb_005892_040--Hb_001405_040 Hb_020805_070 Hb_020805_070 Hb_005892_040--Hb_020805_070 Hb_000977_030 Hb_000977_030 Hb_005892_040--Hb_000977_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.101711 0.577417 0.718448 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.377921 0.351631

CAGE analysis