Hb_093245_010

Information

Type -
Description -
Location Contig93245: 491-1382
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093245_010 0.0 - - -
2 Hb_021888_150 0.1846768364 - - -
3 Hb_002311_230 0.2137118591 - - -
4 Hb_101151_020 0.2260256435 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000770_030 0.2260721441 - - -
6 Hb_002783_050 0.2288298296 - - zinc finger protein, putative [Ricinus communis]
7 Hb_000116_570 0.2361328507 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
8 Hb_007044_010 0.2364390717 - - -
9 Hb_002084_040 0.2377165821 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
10 Hb_001907_060 0.239882758 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
11 Hb_003398_010 0.2399688839 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
12 Hb_000890_220 0.2432072958 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
13 Hb_011639_010 0.2438257859 - - -
14 Hb_001195_150 0.2452751424 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
15 Hb_000093_130 0.2454762369 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_010883_080 0.2462292153 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
17 Hb_000365_060 0.2467659032 - - 5'->3' exoribonuclease, putative [Ricinus communis]
18 Hb_001473_190 0.2468147656 - - 50S ribosomal protein L20 [Hevea brasiliensis]
19 Hb_007348_030 0.2473509298 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
20 Hb_002188_090 0.2482908281 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_093245_010 Hb_093245_010 Hb_021888_150 Hb_021888_150 Hb_093245_010--Hb_021888_150 Hb_002311_230 Hb_002311_230 Hb_093245_010--Hb_002311_230 Hb_101151_020 Hb_101151_020 Hb_093245_010--Hb_101151_020 Hb_000770_030 Hb_000770_030 Hb_093245_010--Hb_000770_030 Hb_002783_050 Hb_002783_050 Hb_093245_010--Hb_002783_050 Hb_000116_570 Hb_000116_570 Hb_093245_010--Hb_000116_570 Hb_021888_150--Hb_000116_570 Hb_003106_150 Hb_003106_150 Hb_021888_150--Hb_003106_150 Hb_000504_160 Hb_000504_160 Hb_021888_150--Hb_000504_160 Hb_002477_150 Hb_002477_150 Hb_021888_150--Hb_002477_150 Hb_010883_080 Hb_010883_080 Hb_021888_150--Hb_010883_080 Hb_002849_080 Hb_002849_080 Hb_021888_150--Hb_002849_080 Hb_005962_010 Hb_005962_010 Hb_002311_230--Hb_005962_010 Hb_000483_180 Hb_000483_180 Hb_002311_230--Hb_000483_180 Hb_119886_040 Hb_119886_040 Hb_002311_230--Hb_119886_040 Hb_007044_010 Hb_007044_010 Hb_002311_230--Hb_007044_010 Hb_008556_020 Hb_008556_020 Hb_002311_230--Hb_008556_020 Hb_011639_010 Hb_011639_010 Hb_002311_230--Hb_011639_010 Hb_000016_280 Hb_000016_280 Hb_101151_020--Hb_000016_280 Hb_000890_220 Hb_000890_220 Hb_101151_020--Hb_000890_220 Hb_013753_010 Hb_013753_010 Hb_101151_020--Hb_013753_010 Hb_000779_040 Hb_000779_040 Hb_101151_020--Hb_000779_040 Hb_007348_030 Hb_007348_030 Hb_101151_020--Hb_007348_030 Hb_012760_200 Hb_012760_200 Hb_101151_020--Hb_012760_200 Hb_002276_050 Hb_002276_050 Hb_000770_030--Hb_002276_050 Hb_009767_090 Hb_009767_090 Hb_000770_030--Hb_009767_090 Hb_003216_120 Hb_003216_120 Hb_000770_030--Hb_003216_120 Hb_000422_140 Hb_000422_140 Hb_000770_030--Hb_000422_140 Hb_004899_030 Hb_004899_030 Hb_000770_030--Hb_004899_030 Hb_000770_030--Hb_021888_150 Hb_002783_050--Hb_000116_570 Hb_001247_230 Hb_001247_230 Hb_002783_050--Hb_001247_230 Hb_002804_050 Hb_002804_050 Hb_002783_050--Hb_002804_050 Hb_002783_050--Hb_010883_080 Hb_006615_100 Hb_006615_100 Hb_002783_050--Hb_006615_100 Hb_000281_010 Hb_000281_010 Hb_002783_050--Hb_000281_010 Hb_000116_570--Hb_000016_280 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.05164 1.88497 0.189445 0 2.38842 2.22828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278484 0.437542 0 0.227855 0.813842

CAGE analysis