Hb_093388_010

Information

Type -
Description -
Location Contig93388: 51-683
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00270g
description hypothetical protein
nr
ID XP_012066903.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID C0LGF5
description Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2
trembl
ID A0A067LPX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04538 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093388_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_001250_030 0.0925223272 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029510_060 0.094931017 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
4 Hb_023738_010 0.0974368679 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
5 Hb_000432_020 0.1141093793 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
6 Hb_003414_040 0.1146983388 - - hypothetical protein VITISV_016691 [Vitis vinifera]
7 Hb_005678_030 0.1279238077 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
8 Hb_005194_050 0.130102087 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
9 Hb_003311_020 0.1320141193 - - conserved hypothetical protein [Ricinus communis]
10 Hb_149345_010 0.1321393676 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_032016_010 0.1378207444 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
12 Hb_000441_080 0.1381495412 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_004374_090 0.1393940197 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
14 Hb_002620_040 0.1415453031 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
15 Hb_000139_030 0.1430146479 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
16 Hb_007533_050 0.144621505 - - -
17 Hb_168319_040 0.1480604237 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
18 Hb_077151_010 0.1483017125 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_057880_020 0.1520583331 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
20 Hb_012528_040 0.1545516914 - - -

Gene co-expression network

sample Hb_093388_010 Hb_093388_010 Hb_001250_030 Hb_001250_030 Hb_093388_010--Hb_001250_030 Hb_029510_060 Hb_029510_060 Hb_093388_010--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_093388_010--Hb_023738_010 Hb_000432_020 Hb_000432_020 Hb_093388_010--Hb_000432_020 Hb_003414_040 Hb_003414_040 Hb_093388_010--Hb_003414_040 Hb_005678_030 Hb_005678_030 Hb_093388_010--Hb_005678_030 Hb_001250_030--Hb_029510_060 Hb_001250_030--Hb_023738_010 Hb_003311_020 Hb_003311_020 Hb_001250_030--Hb_003311_020 Hb_001250_030--Hb_003414_040 Hb_001250_030--Hb_000432_020 Hb_029510_060--Hb_023738_010 Hb_119832_010 Hb_119832_010 Hb_029510_060--Hb_119832_010 Hb_000951_070 Hb_000951_070 Hb_029510_060--Hb_000951_070 Hb_003796_010 Hb_003796_010 Hb_029510_060--Hb_003796_010 Hb_004374_090 Hb_004374_090 Hb_023738_010--Hb_004374_090 Hb_003302_010 Hb_003302_010 Hb_023738_010--Hb_003302_010 Hb_000441_080 Hb_000441_080 Hb_023738_010--Hb_000441_080 Hb_007533_050 Hb_007533_050 Hb_000432_020--Hb_007533_050 Hb_000432_020--Hb_003414_040 Hb_000432_020--Hb_003311_020 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010 Hb_001383_080 Hb_001383_080 Hb_003414_040--Hb_001383_080 Hb_003414_040--Hb_003311_020 Hb_001793_040 Hb_001793_040 Hb_003414_040--Hb_001793_040 Hb_000135_080 Hb_000135_080 Hb_005678_030--Hb_000135_080 Hb_077151_010 Hb_077151_010 Hb_005678_030--Hb_077151_010 Hb_000476_030 Hb_000476_030 Hb_005678_030--Hb_000476_030 Hb_168319_040 Hb_168319_040 Hb_005678_030--Hb_168319_040 Hb_006455_020 Hb_006455_020 Hb_005678_030--Hb_006455_020 Hb_005678_030--Hb_000441_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.177388 0.0936908 0.122461 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0899843 1.57457

CAGE analysis