Hb_093432_020

Information

Type -
Description -
Location Contig93432: 26239-28938
Sequence    

Annotation

kegg
ID rcu:RCOM_1176310
description hypothetical protein
nr
ID XP_012088422.1
description PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
swissprot
ID Q8S8I1
description QWRF motif-containing protein 3 OS=Arabidopsis thaliana GN=QWRF3 PE=2 SV=1
trembl
ID A0A067JN10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25845 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093432_020 0.0 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
2 Hb_002928_070 0.0242075296 - - -
3 Hb_009922_010 0.0541265572 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_053643_010 0.0971443186 - - Zinc finger protein GIS2 [Medicago truncatula]
5 Hb_004108_010 0.1986184387 - - -
6 Hb_061365_010 0.2126237443 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_137515_010 0.2362253445 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
8 Hb_144951_010 0.2446596781 - - putative reverse transcriptase [Oryza sativa Japonica Group]
9 Hb_005203_050 0.2520734046 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_001279_230 0.2573748951 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
11 Hb_000684_340 0.2577545177 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
12 Hb_033623_010 0.2589449379 - - -
13 Hb_189237_010 0.2784603713 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_050495_010 0.2960168686 - - heat-shock protein, putative [Ricinus communis]
15 Hb_004483_020 0.3001641135 - - -
16 Hb_003647_120 0.3109530701 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
17 Hb_089341_010 0.3114939537 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
18 Hb_003337_070 0.3149371158 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
19 Hb_005389_010 0.314964213 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
20 Hb_004846_170 0.3191047147 - - heat-shock protein 70 [Hevea brasiliensis]

Gene co-expression network

sample Hb_093432_020 Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_093432_020--Hb_002928_070 Hb_009922_010 Hb_009922_010 Hb_093432_020--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_093432_020--Hb_053643_010 Hb_004108_010 Hb_004108_010 Hb_093432_020--Hb_004108_010 Hb_061365_010 Hb_061365_010 Hb_093432_020--Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_093432_020--Hb_137515_010 Hb_002928_070--Hb_009922_010 Hb_002928_070--Hb_053643_010 Hb_002928_070--Hb_004108_010 Hb_002928_070--Hb_061365_010 Hb_001279_230 Hb_001279_230 Hb_002928_070--Hb_001279_230 Hb_009922_010--Hb_053643_010 Hb_009922_010--Hb_061365_010 Hb_009922_010--Hb_137515_010 Hb_005203_050 Hb_005203_050 Hb_009922_010--Hb_005203_050 Hb_053643_010--Hb_061365_010 Hb_053643_010--Hb_137515_010 Hb_053643_010--Hb_001279_230 Hb_033623_010 Hb_033623_010 Hb_004108_010--Hb_033623_010 Hb_189237_010 Hb_189237_010 Hb_004108_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_004108_010--Hb_144951_010 Hb_005389_010 Hb_005389_010 Hb_004108_010--Hb_005389_010 Hb_061365_010--Hb_137515_010 Hb_061365_010--Hb_005203_050 Hb_137515_010--Hb_005203_050 Hb_137515_010--Hb_002928_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0191228 0 0 0.0115882 0.0101334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis