Hb_093458_020

Information

Type desease resistance
Description Gene Name: AAA
Location Contig93458: 19680-34175
Sequence    

Annotation

kegg
ID pop:POPTR_0001s14450g
description POPTRDRAFT_178937; hypothetical protein
nr
ID XP_012092645.1
description PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
swissprot
ID Q6NU40
description Chromosome transmission fidelity protein 18 homolog OS=Xenopus laevis GN=chtf18 PE=2 SV=1
trembl
ID B9GMF1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14450g PE=4 SV=2
Gene Ontology
ID GO:0005634
description chromosome transmission fidelity protein 18 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62958: 23305-26763 , PASA_asmbl_62959: 29319-32282 , PASA_asmbl_62960: 32315-33982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093458_020 0.0 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
2 Hb_002284_260 0.0942841399 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
3 Hb_000566_130 0.1043452976 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
4 Hb_002871_130 0.1116243045 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
5 Hb_000003_060 0.1118900688 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
6 Hb_000077_110 0.1167974754 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
7 Hb_004968_040 0.1234325453 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
8 Hb_004007_130 0.1268648881 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
9 Hb_001328_070 0.1350927609 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
10 Hb_004531_080 0.1357454704 - - hypothetical protein RCOM_1491960 [Ricinus communis]
11 Hb_006970_130 0.136918313 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
12 Hb_000288_090 0.1418367411 - - unnamed protein product [Vitis vinifera]
13 Hb_124677_050 0.1452130551 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011861_040 0.1456886488 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
15 Hb_000483_080 0.1463931803 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
16 Hb_000960_090 0.1515250114 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001322_160 0.155403882 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
18 Hb_000307_220 0.1567468599 - - oxidoreductase family protein [Populus trichocarpa]
19 Hb_001780_080 0.1577567127 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
20 Hb_000181_270 0.1588786506 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_093458_020 Hb_093458_020 Hb_002284_260 Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_000566_130 Hb_000566_130 Hb_093458_020--Hb_000566_130 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_000003_060 Hb_000003_060 Hb_093458_020--Hb_000003_060 Hb_000077_110 Hb_000077_110 Hb_093458_020--Hb_000077_110 Hb_004968_040 Hb_004968_040 Hb_093458_020--Hb_004968_040 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002284_260--Hb_002871_130 Hb_003360_010 Hb_003360_010 Hb_002284_260--Hb_003360_010 Hb_002284_260--Hb_000077_110 Hb_000566_130--Hb_000077_110 Hb_004920_050 Hb_004920_050 Hb_000566_130--Hb_004920_050 Hb_000307_220 Hb_000307_220 Hb_000566_130--Hb_000307_220 Hb_000960_090 Hb_000960_090 Hb_000566_130--Hb_000960_090 Hb_000566_130--Hb_002284_260 Hb_002871_130--Hb_004007_130 Hb_004531_080 Hb_004531_080 Hb_002871_130--Hb_004531_080 Hb_011861_040 Hb_011861_040 Hb_002871_130--Hb_011861_040 Hb_000483_080 Hb_000483_080 Hb_002871_130--Hb_000483_080 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_010436_080 Hb_010436_080 Hb_000003_060--Hb_010436_080 Hb_006970_130 Hb_006970_130 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_000077_110--Hb_000483_080 Hb_000077_110--Hb_000307_220 Hb_000077_110--Hb_004920_050 Hb_004968_040--Hb_000077_110 Hb_004968_040--Hb_002284_260 Hb_004968_040--Hb_006970_130 Hb_004968_040--Hb_010436_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137765 0.170337 3.50195 1.8951 0.0907225 0.154695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158271 0.203805 0.0866475 1.30677 0.362417

CAGE analysis