Hb_093458_030

Information

Type -
Description -
Location Contig93458: 34939-38935
Sequence    

Annotation

kegg
ID rcu:RCOM_1020400
description Cellulose synthase A catalytic subunit 1 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_002518122.1
description Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
swissprot
ID O49323
description Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1
trembl
ID B9RWK3
description Cellulose synthase A catalytic subunit 1 [UDP-forming], putative OS=Ricinus communis GN=RCOM_1020400 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cellulose synthase-like protein d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093458_030 0.0 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
2 Hb_028665_010 8.4544e-06 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
3 Hb_032683_010 0.0011219225 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_000208_070 0.0051204174 - - -
5 Hb_008145_020 0.0087698898 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_000173_090 0.009278904 - - -
7 Hb_121689_030 0.0099381505 - - hypothetical protein, partial [Staphylococcus aureus]
8 Hb_108160_010 0.0108395514 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_118909_010 0.0199777426 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
10 Hb_000175_310 0.0222347709 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_186634_010 0.0223141205 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
12 Hb_109791_010 0.0288752508 - - -
13 Hb_001234_090 0.0292099461 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
14 Hb_029695_040 0.0301326658 - - Pectate lyase precursor, putative [Ricinus communis]
15 Hb_003940_060 0.0330965215 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
16 Hb_000684_460 0.0342373591 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_115868_030 0.0351261202 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
18 Hb_067634_010 0.0443664857 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
19 Hb_000312_030 0.0446413437 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
20 Hb_002387_030 0.0501621287 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_093458_030 Hb_093458_030 Hb_028665_010 Hb_028665_010 Hb_093458_030--Hb_028665_010 Hb_032683_010 Hb_032683_010 Hb_093458_030--Hb_032683_010 Hb_000208_070 Hb_000208_070 Hb_093458_030--Hb_000208_070 Hb_008145_020 Hb_008145_020 Hb_093458_030--Hb_008145_020 Hb_000173_090 Hb_000173_090 Hb_093458_030--Hb_000173_090 Hb_121689_030 Hb_121689_030 Hb_093458_030--Hb_121689_030 Hb_028665_010--Hb_032683_010 Hb_028665_010--Hb_000208_070 Hb_028665_010--Hb_008145_020 Hb_028665_010--Hb_000173_090 Hb_028665_010--Hb_121689_030 Hb_032683_010--Hb_000208_070 Hb_032683_010--Hb_008145_020 Hb_032683_010--Hb_000173_090 Hb_032683_010--Hb_121689_030 Hb_000208_070--Hb_008145_020 Hb_000208_070--Hb_000173_090 Hb_000208_070--Hb_121689_030 Hb_108160_010 Hb_108160_010 Hb_000208_070--Hb_108160_010 Hb_008145_020--Hb_000173_090 Hb_008145_020--Hb_121689_030 Hb_008145_020--Hb_108160_010 Hb_000173_090--Hb_121689_030 Hb_000173_090--Hb_108160_010 Hb_121689_030--Hb_108160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0128593 0.0230861

CAGE analysis