Hb_093666_010

Information

Type -
Description -
Location Contig93666: 580-4422
Sequence    

Annotation

kegg
ID ath:AT1G09130
description ATP-dependent Clp protease proteolytic subunit-related protein 3
nr
ID CDX95009.1
description BnaC05g06620D [Brassica napus]
swissprot
ID Q8L770
description ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
trembl
ID A0A078E356
description ATP-dependent Clp protease proteolytic subunit OS=Brassica napus GN=BnaC05g06620D PE=3 SV=1
Gene Ontology
ID GO:0009532
description protease complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63003: 3769-4384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093666_010 0.0 - - BnaC05g06620D [Brassica napus]
2 Hb_065525_080 0.0562358348 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
3 Hb_113853_010 0.0770172128 - - 50S ribosomal protein L2, putative [Ricinus communis]
4 Hb_030414_040 0.079284976 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
5 Hb_001623_270 0.080031267 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
6 Hb_021374_030 0.0806973008 - - hypothetical protein RCOM_0351490 [Ricinus communis]
7 Hb_183433_010 0.0813897066 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_000789_320 0.0845853187 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
9 Hb_000120_210 0.0858330067 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
10 Hb_004096_240 0.0860053188 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
11 Hb_001541_050 0.0863609174 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
12 Hb_005494_010 0.0871708232 - - catalytic, putative [Ricinus communis]
13 Hb_002471_250 0.0884917655 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
14 Hb_000416_110 0.0923072983 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
15 Hb_005542_130 0.0928695483 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
16 Hb_002876_300 0.0935158919 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
17 Hb_007831_010 0.094941425 - - PREDICTED: oligoribonuclease [Vitis vinifera]
18 Hb_029351_010 0.0957877559 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_021943_080 0.0964497786 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
20 Hb_163175_010 0.0973160707 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_093666_010 Hb_093666_010 Hb_065525_080 Hb_065525_080 Hb_093666_010--Hb_065525_080 Hb_113853_010 Hb_113853_010 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_001623_270 Hb_001623_270 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_183433_010 Hb_183433_010 Hb_093666_010--Hb_183433_010 Hb_001221_440 Hb_001221_440 Hb_065525_080--Hb_001221_440 Hb_065525_080--Hb_113853_010 Hb_065525_080--Hb_001623_270 Hb_000375_390 Hb_000375_390 Hb_065525_080--Hb_000375_390 Hb_065525_080--Hb_183433_010 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_113853_010--Hb_021374_030 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_006913_020 Hb_006913_020 Hb_021374_030--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_021374_030--Hb_007413_010 Hb_000599_270 Hb_000599_270 Hb_021374_030--Hb_000599_270 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_000749_010 Hb_000749_010 Hb_021374_030--Hb_000749_010 Hb_021374_030--Hb_183433_010 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.26967 5.21618 13.0895 8.15827 4.60228 7.79579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12559 8.36553 2.71215 7.14617 9.82508

CAGE analysis