Hb_093666_020

Information

Type -
Description -
Location Contig93666: 4769-7389
Sequence    

Annotation

kegg
ID gmx:100813342
description 60S ribosomal protein L7-4-like
nr
ID XP_012074809.1
description PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
swissprot
ID P60040
description 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=2 SV=1
trembl
ID K7MBV7
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l7-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63004: 4756-7353 , PASA_asmbl_63005: 5729-6157
cDNA
(Sanger)
(ID:Location)		 001_E14.ab1: 4998-7332 , 048_P22.ab1: 6375-7353

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093666_020 0.0 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
2 Hb_003011_040 0.083479944 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
3 Hb_004223_220 0.0937862165 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
4 Hb_001279_070 0.0942175288 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
5 Hb_004502_020 0.0948309185 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
6 Hb_001269_320 0.0971778949 - - 40S ribosomal protein S12A [Hevea brasiliensis]
7 Hb_000505_140 0.0987631443 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
8 Hb_000684_230 0.1021197659 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_000003_730 0.1055740213 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
10 Hb_078185_010 0.1058127468 - - -
11 Hb_007432_080 0.105874244 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
12 Hb_010180_010 0.1064556279 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
13 Hb_002207_110 0.1065098837 - - -
14 Hb_001998_230 0.1090748005 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
15 Hb_000080_060 0.1111417374 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
16 Hb_000155_180 0.1115031016 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
17 Hb_000771_100 0.1118332657 - - Os06g0527300 [Oryza sativa Japonica Group]
18 Hb_004306_020 0.1125557548 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
19 Hb_004545_060 0.1132644059 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
20 Hb_007441_270 0.1142454351 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]

Gene co-expression network

sample Hb_093666_020 Hb_093666_020 Hb_003011_040 Hb_003011_040 Hb_093666_020--Hb_003011_040 Hb_004223_220 Hb_004223_220 Hb_093666_020--Hb_004223_220 Hb_001279_070 Hb_001279_070 Hb_093666_020--Hb_001279_070 Hb_004502_020 Hb_004502_020 Hb_093666_020--Hb_004502_020 Hb_001269_320 Hb_001269_320 Hb_093666_020--Hb_001269_320 Hb_000505_140 Hb_000505_140 Hb_093666_020--Hb_000505_140 Hb_003011_040--Hb_004223_220 Hb_000155_180 Hb_000155_180 Hb_003011_040--Hb_000155_180 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_005389_150 Hb_005389_150 Hb_003011_040--Hb_005389_150 Hb_003011_040--Hb_001269_320 Hb_004223_220--Hb_004502_020 Hb_002296_040 Hb_002296_040 Hb_004223_220--Hb_002296_040 Hb_004223_220--Hb_000155_180 Hb_184570_010 Hb_184570_010 Hb_004223_220--Hb_184570_010 Hb_003874_020 Hb_003874_020 Hb_001279_070--Hb_003874_020 Hb_032202_090 Hb_032202_090 Hb_001279_070--Hb_032202_090 Hb_009767_120 Hb_009767_120 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_007432_080 Hb_007432_080 Hb_001279_070--Hb_007432_080 Hb_004502_020--Hb_000505_140 Hb_031089_040 Hb_031089_040 Hb_004502_020--Hb_031089_040 Hb_004502_020--Hb_000155_180 Hb_000003_730 Hb_000003_730 Hb_004502_020--Hb_000003_730 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_004502_020--Hb_032202_090 Hb_003266_050 Hb_003266_050 Hb_001269_320--Hb_003266_050 Hb_007229_070 Hb_007229_070 Hb_001269_320--Hb_007229_070 Hb_004440_050 Hb_004440_050 Hb_001269_320--Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_001269_320--Hb_001369_660 Hb_001269_320--Hb_001279_070 Hb_012022_120 Hb_012022_120 Hb_000505_140--Hb_012022_120 Hb_000000_170 Hb_000000_170 Hb_000505_140--Hb_000000_170 Hb_000505_140--Hb_032202_090 Hb_000086_550 Hb_000086_550 Hb_000505_140--Hb_000086_550 Hb_000926_300 Hb_000926_300 Hb_000505_140--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.8211 7.31846 24.4607 64.8439 68.5395 111.96
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.7111 121.681 41.0046 40.0122 13.3388

CAGE analysis