Hb_094002_010

Information

Type -
Description -
Location Contig94002: 674-2749
Sequence    

Annotation

kegg
ID vvi:100855076
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_010658126.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID F6HVC2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00570 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094002_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
2 Hb_002090_010 0.123714701 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
3 Hb_005595_030 0.127492805 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
4 Hb_001355_050 0.1433379344 - - -
5 Hb_001880_020 0.1445170437 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
6 Hb_003927_020 0.1590416465 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
7 Hb_150516_010 0.1601143846 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
8 Hb_011892_010 0.1623590799 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_008055_030 0.1664303304 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_000167_070 0.1728601324 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
11 Hb_043792_030 0.1760870009 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
12 Hb_001856_280 0.1815577845 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_180214_010 0.1860725234 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
14 Hb_006992_030 0.1873824209 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
15 Hb_019654_170 0.1892892014 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
16 Hb_000346_050 0.1909016914 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
17 Hb_020831_070 0.1923822654 - - hypothetical protein VITISV_027174 [Vitis vinifera]
18 Hb_000522_030 0.1929141464 - - hypothetical protein VITISV_006017 [Vitis vinifera]
19 Hb_000574_030 0.1946808333 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_000418_160 0.1969734849 - - -

Gene co-expression network

sample Hb_094002_010 Hb_094002_010 Hb_002090_010 Hb_002090_010 Hb_094002_010--Hb_002090_010 Hb_005595_030 Hb_005595_030 Hb_094002_010--Hb_005595_030 Hb_001355_050 Hb_001355_050 Hb_094002_010--Hb_001355_050 Hb_001880_020 Hb_001880_020 Hb_094002_010--Hb_001880_020 Hb_003927_020 Hb_003927_020 Hb_094002_010--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_094002_010--Hb_150516_010 Hb_008055_030 Hb_008055_030 Hb_002090_010--Hb_008055_030 Hb_002090_010--Hb_005595_030 Hb_002090_010--Hb_001880_020 Hb_108557_010 Hb_108557_010 Hb_002090_010--Hb_108557_010 Hb_000418_160 Hb_000418_160 Hb_002090_010--Hb_000418_160 Hb_005595_030--Hb_001355_050 Hb_005595_030--Hb_001880_020 Hb_005595_030--Hb_003927_020 Hb_006992_030 Hb_006992_030 Hb_005595_030--Hb_006992_030 Hb_000167_070 Hb_000167_070 Hb_005595_030--Hb_000167_070 Hb_001355_050--Hb_003927_020 Hb_001355_050--Hb_006992_030 Hb_001355_050--Hb_150516_010 Hb_001355_050--Hb_001880_020 Hb_043792_030 Hb_043792_030 Hb_001355_050--Hb_043792_030 Hb_001880_020--Hb_000167_070 Hb_001880_020--Hb_003927_020 Hb_001856_280 Hb_001856_280 Hb_001880_020--Hb_001856_280 Hb_001880_020--Hb_043792_030 Hb_003927_020--Hb_000167_070 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_005623_060 Hb_005623_060 Hb_150516_010--Hb_005623_060 Hb_000522_030 Hb_000522_030 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0177117 0.0297087 0 0 0.00935689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0693287 0.22111

CAGE analysis