Hb_094022_010

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig94022: 476-5925
Sequence    

Annotation

kegg
ID sly:101263064
description uncharacterized LOC101263064
nr
ID KDP38897.1
description hypothetical protein JCGZ_05054 [Jatropha curcas]
swissprot
ID Q5PP38
description GATA transcription factor 27 OS=Arabidopsis thaliana GN=GATA27 PE=2 SV=1
trembl
ID A0A067KRY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05054 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63156: 3176-5466 , PASA_asmbl_63157: 3176-5466 , PASA_asmbl_63158: 3492-5466 , PASA_asmbl_63159: 3676-5355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094022_010 0.0 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
2 Hb_000699_130 0.1088553183 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003752_080 0.1122194605 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
4 Hb_000529_080 0.113757753 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
5 Hb_000002_330 0.114465704 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
6 Hb_000342_110 0.1171290781 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
7 Hb_007803_010 0.1183950355 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
8 Hb_001405_120 0.1191494353 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
9 Hb_000211_110 0.1208270978 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
10 Hb_007086_010 0.1241496466 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
11 Hb_001357_380 0.1246266067 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000236_320 0.1268887201 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
13 Hb_008406_160 0.1290003801 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
14 Hb_008887_050 0.1299130557 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
15 Hb_185679_010 0.1306251009 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
16 Hb_007919_060 0.1313785482 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
17 Hb_001946_260 0.1320528625 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
18 Hb_007747_060 0.1321687175 - - PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Jatropha curcas]
19 Hb_009838_090 0.1321949636 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
20 Hb_000645_150 0.1321949896 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_094022_010 Hb_094022_010 Hb_000699_130 Hb_000699_130 Hb_094022_010--Hb_000699_130 Hb_003752_080 Hb_003752_080 Hb_094022_010--Hb_003752_080 Hb_000529_080 Hb_000529_080 Hb_094022_010--Hb_000529_080 Hb_000002_330 Hb_000002_330 Hb_094022_010--Hb_000002_330 Hb_000342_110 Hb_000342_110 Hb_094022_010--Hb_000342_110 Hb_007803_010 Hb_007803_010 Hb_094022_010--Hb_007803_010 Hb_007919_060 Hb_007919_060 Hb_000699_130--Hb_007919_060 Hb_001014_010 Hb_001014_010 Hb_000699_130--Hb_001014_010 Hb_022250_030 Hb_022250_030 Hb_000699_130--Hb_022250_030 Hb_005245_130 Hb_005245_130 Hb_000699_130--Hb_005245_130 Hb_001124_120 Hb_001124_120 Hb_000699_130--Hb_001124_120 Hb_031939_010 Hb_031939_010 Hb_000699_130--Hb_031939_010 Hb_002233_150 Hb_002233_150 Hb_003752_080--Hb_002233_150 Hb_002687_140 Hb_002687_140 Hb_003752_080--Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_003752_080--Hb_001348_070 Hb_001047_100 Hb_001047_100 Hb_003752_080--Hb_001047_100 Hb_002495_070 Hb_002495_070 Hb_003752_080--Hb_002495_070 Hb_001405_120 Hb_001405_120 Hb_003752_080--Hb_001405_120 Hb_000205_120 Hb_000205_120 Hb_000529_080--Hb_000205_120 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_000265_150 Hb_000265_150 Hb_000529_080--Hb_000265_150 Hb_008887_050 Hb_008887_050 Hb_000529_080--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000529_080--Hb_000976_270 Hb_000529_080--Hb_031939_010 Hb_000236_320 Hb_000236_320 Hb_000002_330--Hb_000236_320 Hb_006816_500 Hb_006816_500 Hb_000002_330--Hb_006816_500 Hb_000322_050 Hb_000322_050 Hb_000002_330--Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_000002_330--Hb_003453_020 Hb_004096_170 Hb_004096_170 Hb_000002_330--Hb_004096_170 Hb_000645_150 Hb_000645_150 Hb_000002_330--Hb_000645_150 Hb_003020_110 Hb_003020_110 Hb_000342_110--Hb_003020_110 Hb_002007_350 Hb_002007_350 Hb_000342_110--Hb_002007_350 Hb_000342_110--Hb_005245_130 Hb_001541_260 Hb_001541_260 Hb_000342_110--Hb_001541_260 Hb_011942_080 Hb_011942_080 Hb_000342_110--Hb_011942_080 Hb_000139_250 Hb_000139_250 Hb_000342_110--Hb_000139_250 Hb_007747_060 Hb_007747_060 Hb_007803_010--Hb_007747_060 Hb_003073_200 Hb_003073_200 Hb_007803_010--Hb_003073_200 Hb_000421_070 Hb_000421_070 Hb_007803_010--Hb_000421_070 Hb_000008_330 Hb_000008_330 Hb_007803_010--Hb_000008_330 Hb_002081_130 Hb_002081_130 Hb_007803_010--Hb_002081_130 Hb_003464_110 Hb_003464_110 Hb_007803_010--Hb_003464_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95633 1.30461 1.27527 0.620772 3.57565 2.33708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09109 1.86521 0.494759 1.94934 0.412745

CAGE analysis