Hb_094101_010

Information

Type -
Description -
Location Contig94101: 105-2243
Sequence    

Annotation

kegg
ID vvi:100241001
description pentatricopeptide repeat-containing protein At2g39620
nr
ID KDP29839.1
description hypothetical protein JCGZ_18414 [Jatropha curcas]
swissprot
ID Q9SY02
description Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
trembl
ID A0A067KDB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18414 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at2g39620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094101_010 0.0 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
2 Hb_083569_010 0.160659514 - - -
3 Hb_001414_130 0.1923579662 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
4 Hb_003311_050 0.1934102112 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
5 Hb_009780_090 0.2279348855 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
6 Hb_021583_010 0.2367027911 - - -
7 Hb_000928_150 0.244978284 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003609_010 0.2571745687 - - -
9 Hb_000563_220 0.2612528285 - - hypothetical protein VITISV_004111 [Vitis vinifera]
10 Hb_026437_010 0.2615295557 - - -
11 Hb_010874_030 0.2627090111 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
12 Hb_002417_060 0.2848172184 - - Cell division cycle protein, putative [Ricinus communis]
13 Hb_000808_060 0.2922075725 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
14 Hb_002073_040 0.3003669622 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004096_080 0.302262118 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_031089_030 0.3033063254 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
17 Hb_005625_040 0.3038059882 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
18 Hb_000009_590 0.3041125914 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
19 Hb_103624_010 0.3078431603 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
20 Hb_002609_010 0.3079443113 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]

Gene co-expression network

sample Hb_094101_010 Hb_094101_010 Hb_083569_010 Hb_083569_010 Hb_094101_010--Hb_083569_010 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_003311_050 Hb_003311_050 Hb_094101_010--Hb_003311_050 Hb_009780_090 Hb_009780_090 Hb_094101_010--Hb_009780_090 Hb_021583_010 Hb_021583_010 Hb_094101_010--Hb_021583_010 Hb_000928_150 Hb_000928_150 Hb_094101_010--Hb_000928_150 Hb_083569_010--Hb_021583_010 Hb_000563_220 Hb_000563_220 Hb_083569_010--Hb_000563_220 Hb_083569_010--Hb_009780_090 Hb_003609_010 Hb_003609_010 Hb_083569_010--Hb_003609_010 Hb_083569_010--Hb_003311_050 Hb_001414_130--Hb_003311_050 Hb_005269_030 Hb_005269_030 Hb_001414_130--Hb_005269_030 Hb_000832_330 Hb_000832_330 Hb_001414_130--Hb_000832_330 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_018118_040 Hb_018118_040 Hb_001414_130--Hb_018118_040 Hb_003311_050--Hb_000928_150 Hb_003311_050--Hb_009780_090 Hb_010874_030 Hb_010874_030 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_009780_090--Hb_000928_150 Hb_009780_090--Hb_010874_030 Hb_009780_090--Hb_021583_010 Hb_021583_010--Hb_003311_050 Hb_019282_010 Hb_019282_010 Hb_021583_010--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_021583_010--Hb_001427_180 Hb_035662_010 Hb_035662_010 Hb_000928_150--Hb_035662_010 Hb_128376_010 Hb_128376_010 Hb_000928_150--Hb_128376_010 Hb_000928_150--Hb_012423_010 Hb_006269_040 Hb_006269_040 Hb_000928_150--Hb_006269_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.322408 0.462345 0.0431783 0 0.47169 0.509778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.387418 0 0.200399 0

CAGE analysis