Hb_094132_010

Information

Type -
Description -
Location Contig94132: 113-690
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03360g
description POPTRDRAFT_737483; hypothetical protein
nr
ID XP_002324378.2
description hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
swissprot
ID Q54YK1
description Putative UDP-sugar transporter DDB_G0278631 OS=Dictyostelium discoideum GN=DDB_G0278631 PE=3 SV=2
trembl
ID B9ILD4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03360g PE=4 SV=2
Gene Ontology
ID GO:0005794
description udp-sugar transporter ddb_g0278631

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094132_010 0.0 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
2 Hb_000193_030 0.0402330032 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
3 Hb_103093_010 0.1409776234 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
4 Hb_163132_010 0.1662048106 - - -
5 Hb_000671_040 0.1676697685 - - -
6 Hb_007356_010 0.1678242932 - - CTV.19 [Citrus trifoliata]
7 Hb_007290_020 0.1699895092 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
8 Hb_068804_060 0.1700515887 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
9 Hb_000300_140 0.1725615596 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
10 Hb_033312_110 0.1986328251 - - -
11 Hb_005723_070 0.2003166817 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
12 Hb_020532_010 0.2048599472 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
13 Hb_002450_130 0.2075603947 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
14 Hb_021943_070 0.2078110365 - - -
15 Hb_002972_060 0.2138333384 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_000340_330 0.2144413414 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
17 Hb_004907_030 0.2145605443 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
18 Hb_000130_170 0.2183246839 - - -
19 Hb_000066_180 0.2242565096 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
20 Hb_002079_020 0.2301100044 - - -

Gene co-expression network

sample Hb_094132_010 Hb_094132_010 Hb_000193_030 Hb_000193_030 Hb_094132_010--Hb_000193_030 Hb_103093_010 Hb_103093_010 Hb_094132_010--Hb_103093_010 Hb_163132_010 Hb_163132_010 Hb_094132_010--Hb_163132_010 Hb_000671_040 Hb_000671_040 Hb_094132_010--Hb_000671_040 Hb_007356_010 Hb_007356_010 Hb_094132_010--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_094132_010--Hb_007290_020 Hb_000193_030--Hb_103093_010 Hb_000193_030--Hb_163132_010 Hb_000193_030--Hb_007356_010 Hb_000193_030--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000193_030--Hb_068804_060 Hb_000340_330 Hb_000340_330 Hb_103093_010--Hb_000340_330 Hb_000130_170 Hb_000130_170 Hb_103093_010--Hb_000130_170 Hb_021943_070 Hb_021943_070 Hb_103093_010--Hb_021943_070 Hb_005723_070 Hb_005723_070 Hb_103093_010--Hb_005723_070 Hb_163132_010--Hb_007356_010 Hb_163132_010--Hb_007290_020 Hb_163132_010--Hb_068804_060 Hb_000300_140 Hb_000300_140 Hb_163132_010--Hb_000300_140 Hb_033312_110 Hb_033312_110 Hb_163132_010--Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_163132_010--Hb_004907_030 Hb_106873_010 Hb_106873_010 Hb_000671_040--Hb_106873_010 Hb_000671_040--Hb_163132_010 Hb_000671_040--Hb_007356_010 Hb_000671_040--Hb_007290_020 Hb_000671_040--Hb_068804_060 Hb_000671_040--Hb_000300_140 Hb_007356_010--Hb_007290_020 Hb_007356_010--Hb_068804_060 Hb_007356_010--Hb_000300_140 Hb_007356_010--Hb_033312_110 Hb_007356_010--Hb_004907_030 Hb_007290_020--Hb_068804_060 Hb_007290_020--Hb_000300_140 Hb_007290_020--Hb_033312_110 Hb_007290_020--Hb_004907_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.482039 0 9.08366 0 17.4727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.812884 0

CAGE analysis