Hb_094437_020

Information

Type -
Description -
Location Contig94437: 2998-5310
Sequence    

Annotation

kegg
ID rcu:RCOM_1588040
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_002510119.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID B9R726
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1588040 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63227: 2609-2793 , PASA_asmbl_63228: 2882-5620 , PASA_asmbl_63229: 4341-5107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094437_020 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_003858_060 0.1096804581 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
3 Hb_000207_240 0.1098231595 - - hypothetical protein RCOM_0686540 [Ricinus communis]
4 Hb_006916_140 0.1146862948 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
5 Hb_000856_210 0.1165192864 - - nitrate transporter, putative [Ricinus communis]
6 Hb_000392_490 0.1210485533 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
7 Hb_004204_220 0.1217620398 - - -
8 Hb_006351_120 0.1232702049 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
9 Hb_046117_030 0.1340152948 - - sialyltransferase, putative [Ricinus communis]
10 Hb_002876_280 0.1359590401 - - hypothetical protein RCOM_0686540 [Ricinus communis]
11 Hb_008461_070 0.1365997379 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
12 Hb_016734_040 0.1366219499 - - abhydrolase domain containing, putative [Ricinus communis]
13 Hb_009222_080 0.1371756997 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
14 Hb_001629_050 0.1378031443 - - structural constituent of cell wall, putative [Ricinus communis]
15 Hb_011161_090 0.1384670355 - - -
16 Hb_003714_030 0.1390864522 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_002983_090 0.1424328329 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
18 Hb_005329_030 0.1433812447 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
19 Hb_006355_070 0.1457476759 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
20 Hb_001097_140 0.1459710567 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_094437_020 Hb_094437_020 Hb_003858_060 Hb_003858_060 Hb_094437_020--Hb_003858_060 Hb_000207_240 Hb_000207_240 Hb_094437_020--Hb_000207_240 Hb_006916_140 Hb_006916_140 Hb_094437_020--Hb_006916_140 Hb_000856_210 Hb_000856_210 Hb_094437_020--Hb_000856_210 Hb_000392_490 Hb_000392_490 Hb_094437_020--Hb_000392_490 Hb_004204_220 Hb_004204_220 Hb_094437_020--Hb_004204_220 Hb_003858_060--Hb_004204_220 Hb_000834_100 Hb_000834_100 Hb_003858_060--Hb_000834_100 Hb_002876_280 Hb_002876_280 Hb_003858_060--Hb_002876_280 Hb_003858_060--Hb_000856_210 Hb_001629_050 Hb_001629_050 Hb_003858_060--Hb_001629_050 Hb_000207_240--Hb_000856_210 Hb_001097_140 Hb_001097_140 Hb_000207_240--Hb_001097_140 Hb_003714_030 Hb_003714_030 Hb_000207_240--Hb_003714_030 Hb_006351_120 Hb_006351_120 Hb_000207_240--Hb_006351_120 Hb_019925_020 Hb_019925_020 Hb_000207_240--Hb_019925_020 Hb_001396_130 Hb_001396_130 Hb_000207_240--Hb_001396_130 Hb_000963_120 Hb_000963_120 Hb_006916_140--Hb_000963_120 Hb_005329_030 Hb_005329_030 Hb_006916_140--Hb_005329_030 Hb_009222_080 Hb_009222_080 Hb_006916_140--Hb_009222_080 Hb_006916_140--Hb_000392_490 Hb_000023_180 Hb_000023_180 Hb_006916_140--Hb_000023_180 Hb_000856_210--Hb_019925_020 Hb_000856_210--Hb_006351_120 Hb_000856_210--Hb_002876_280 Hb_000309_070 Hb_000309_070 Hb_000392_490--Hb_000309_070 Hb_000392_490--Hb_001629_050 Hb_000392_490--Hb_005329_030 Hb_026198_020 Hb_026198_020 Hb_000392_490--Hb_026198_020 Hb_000392_490--Hb_000963_120 Hb_004204_220--Hb_001629_050 Hb_011161_090 Hb_011161_090 Hb_004204_220--Hb_011161_090 Hb_002095_020 Hb_002095_020 Hb_004204_220--Hb_002095_020 Hb_004204_220--Hb_000834_100 Hb_002902_070 Hb_002902_070 Hb_004204_220--Hb_002902_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51169 96.1855 27.0026 197.341 1.84285 2.10984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.519207 0.726308 1.95823 77.5527 318.859

CAGE analysis