Hb_094529_020

Information

Type -
Description -
Location Contig94529: 15360-15587
Sequence    

Annotation

kegg
ID rcu:RCOM_0496700
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_002527842.1
description leucine-rich repeat containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPC3
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_0496700 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094529_020 0.0 - - leucine-rich repeat containing protein, putative [Ricinus communis]
2 Hb_033153_080 0.1532325659 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
3 Hb_004947_010 0.1797194064 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_001248_120 0.1976024595 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000160_050 0.2048722377 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
6 Hb_003411_120 0.2111057371 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
7 Hb_016875_010 0.2125402311 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_002367_030 0.2167708991 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
9 Hb_001102_310 0.2183936269 - - Protein AFR, putative [Ricinus communis]
10 Hb_007382_130 0.2254533256 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
11 Hb_001097_080 0.2277324702 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
12 Hb_002150_100 0.2317051087 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Jatropha curcas]
13 Hb_017400_010 0.2329721651 - - unnamed protein product [Vitis vinifera]
14 Hb_003540_180 0.2330423214 - - -
15 Hb_091537_010 0.2403190064 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_019818_010 0.2471647968 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
17 Hb_000347_210 0.2579538479 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
18 Hb_000896_070 0.2597146017 - - ammonium transporter, putative [Ricinus communis]
19 Hb_003813_010 0.2627035141 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
20 Hb_008054_060 0.2644287893 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]

Gene co-expression network

sample Hb_094529_020 Hb_094529_020 Hb_033153_080 Hb_033153_080 Hb_094529_020--Hb_033153_080 Hb_004947_010 Hb_004947_010 Hb_094529_020--Hb_004947_010 Hb_001248_120 Hb_001248_120 Hb_094529_020--Hb_001248_120 Hb_000160_050 Hb_000160_050 Hb_094529_020--Hb_000160_050 Hb_003411_120 Hb_003411_120 Hb_094529_020--Hb_003411_120 Hb_016875_010 Hb_016875_010 Hb_094529_020--Hb_016875_010 Hb_033153_080--Hb_000160_050 Hb_033153_080--Hb_004947_010 Hb_033153_080--Hb_016875_010 Hb_003540_180 Hb_003540_180 Hb_033153_080--Hb_003540_180 Hb_002367_030 Hb_002367_030 Hb_033153_080--Hb_002367_030 Hb_004947_010--Hb_016875_010 Hb_008054_060 Hb_008054_060 Hb_004947_010--Hb_008054_060 Hb_112440_010 Hb_112440_010 Hb_004947_010--Hb_112440_010 Hb_004947_010--Hb_000160_050 Hb_005529_020 Hb_005529_020 Hb_001248_120--Hb_005529_020 Hb_001195_670 Hb_001195_670 Hb_001248_120--Hb_001195_670 Hb_001248_120--Hb_000160_050 Hb_001248_120--Hb_003411_120 Hb_000450_170 Hb_000450_170 Hb_001248_120--Hb_000450_170 Hb_000160_050--Hb_016875_010 Hb_051677_010 Hb_051677_010 Hb_000160_050--Hb_051677_010 Hb_002391_060 Hb_002391_060 Hb_000160_050--Hb_002391_060 Hb_001097_080 Hb_001097_080 Hb_003411_120--Hb_001097_080 Hb_000617_300 Hb_000617_300 Hb_003411_120--Hb_000617_300 Hb_147137_010 Hb_147137_010 Hb_003411_120--Hb_147137_010 Hb_003371_030 Hb_003371_030 Hb_003411_120--Hb_003371_030 Hb_005914_130 Hb_005914_130 Hb_003411_120--Hb_005914_130 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020 Hb_003095_080 Hb_003095_080 Hb_016875_010--Hb_003095_080 Hb_016875_010--Hb_008054_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.8393 2.85719 208.972 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856525 51.307 0 14.8048 2.58325

CAGE analysis