Hb_095296_010

Information

Type -
Description -
Location Contig95296: 13697-18943
Sequence    

Annotation

kegg
ID rcu:RCOM_0925890
description syntaxin, putative
nr
ID XP_012078675.1
description PREDICTED: syntaxin-32 [Jatropha curcas]
swissprot
ID Q9LK09
description Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1
trembl
ID A0A067K8A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13247 PE=3 SV=1
Gene Ontology
ID GO:0005622
description syntaxin-32-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63446: 13868-18900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095296_010 0.0 - - PREDICTED: syntaxin-32 [Jatropha curcas]
2 Hb_000868_110 0.0362758562 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
3 Hb_002073_200 0.0655458986 - - Phosphatase 2A-2 [Theobroma cacao]
4 Hb_005116_060 0.0715382022 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
5 Hb_003020_270 0.0717845615 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
6 Hb_006816_350 0.0735371618 - - PREDICTED: syntaxin-43 [Jatropha curcas]
7 Hb_000869_080 0.0767306244 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
8 Hb_164010_040 0.076828056 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_006588_210 0.0777446702 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
10 Hb_003001_080 0.0787196318 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_005306_190 0.0791331328 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
12 Hb_000705_170 0.0802589037 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
13 Hb_013358_040 0.0844608607 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
14 Hb_000696_090 0.0850291296 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
15 Hb_000886_050 0.085585781 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
16 Hb_000331_670 0.085691398 - - PREDICTED: protein tipD [Jatropha curcas]
17 Hb_000738_020 0.0862516264 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000069_310 0.0870120162 - - ubiquitin ligase [Cucumis melo subsp. melo]
19 Hb_004324_110 0.0880411823 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
20 Hb_000179_070 0.0881633194 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]

Gene co-expression network

sample Hb_095296_010 Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_005116_060 Hb_005116_060 Hb_095296_010--Hb_005116_060 Hb_003020_270 Hb_003020_270 Hb_095296_010--Hb_003020_270 Hb_006816_350 Hb_006816_350 Hb_095296_010--Hb_006816_350 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_000868_110--Hb_002073_200 Hb_164010_040 Hb_164010_040 Hb_000868_110--Hb_164010_040 Hb_003001_080 Hb_003001_080 Hb_000868_110--Hb_003001_080 Hb_021576_110 Hb_021576_110 Hb_000868_110--Hb_021576_110 Hb_000868_110--Hb_000869_080 Hb_013358_040 Hb_013358_040 Hb_002073_200--Hb_013358_040 Hb_000025_730 Hb_000025_730 Hb_002073_200--Hb_000025_730 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_002073_200--Hb_164010_040 Hb_000340_400 Hb_000340_400 Hb_005116_060--Hb_000340_400 Hb_007035_050 Hb_007035_050 Hb_005116_060--Hb_007035_050 Hb_006478_040 Hb_006478_040 Hb_005116_060--Hb_006478_040 Hb_001030_020 Hb_001030_020 Hb_005116_060--Hb_001030_020 Hb_005116_060--Hb_003001_080 Hb_003020_270--Hb_006816_350 Hb_000179_070 Hb_000179_070 Hb_003020_270--Hb_000179_070 Hb_003020_270--Hb_000868_110 Hb_002553_040 Hb_002553_040 Hb_003020_270--Hb_002553_040 Hb_000696_090 Hb_000696_090 Hb_003020_270--Hb_000696_090 Hb_000661_290 Hb_000661_290 Hb_006816_350--Hb_000661_290 Hb_000357_110 Hb_000357_110 Hb_006816_350--Hb_000357_110 Hb_006816_350--Hb_000868_110 Hb_006816_350--Hb_000179_070 Hb_000729_030 Hb_000729_030 Hb_000869_080--Hb_000729_030 Hb_000869_080--Hb_164010_040 Hb_000869_080--Hb_013358_040 Hb_000869_080--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_000869_080--Hb_005162_090 Hb_000869_080--Hb_002073_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0063 27.5771 18.5011 18.7482 16.8102 14.2041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7404 26.0996 18.8143 9.90379 10.8871

CAGE analysis