Hb_095397_010

Information

Type -
Description -
Location Contig95397: 4814-6848
Sequence    

Annotation

kegg
ID -
description -
nr
ID ADR71302.1
description hypothetical protein 25 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMR5
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63480: 4797-6902
cDNA
(Sanger)
(ID:Location)		 004_J16.ab1: 6080-6902 , 006_J07.ab1: 4800-5597 , 022_A11.ab1: 4797-5455 , 032_L18.ab1: 6080-6902 , 032_N20.ab1: 4816-5451 , 043_N10.ab1: 4829-5517 , 044_D16.ab1: 6080-6902

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095397_010 0.0 - - hypothetical protein 25 [Hevea brasiliensis]
2 Hb_007810_040 0.0898586457 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
3 Hb_003906_120 0.0908219098 - - -
4 Hb_003304_080 0.0934183363 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
5 Hb_002232_180 0.1027598401 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
6 Hb_000050_120 0.1199616583 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
7 Hb_043637_010 0.1218929153 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
8 Hb_007178_010 0.125384214 - - pseudo-hevein [Hevea brasiliensis]
9 Hb_003906_110 0.1256919228 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
10 Hb_001780_060 0.1305057655 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
11 Hb_004545_150 0.1325513358 - - PREDICTED: paramyosin [Jatropha curcas]
12 Hb_002989_080 0.134876669 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
13 Hb_002078_040 0.1353798112 - - protein with unknown function [Ricinus communis]
14 Hb_000603_200 0.1357830291 - - PREDICTED: myosin-15 [Jatropha curcas]
15 Hb_000376_150 0.1379931386 - - O-acyltransferase WSD1 [Gossypium arboreum]
16 Hb_000329_620 0.1392623854 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
17 Hb_011609_190 0.1415875412 - - 14-3-3 protein 2 [Hevea brasiliensis]
18 Hb_000523_020 0.142796404 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
19 Hb_000483_370 0.1429624908 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000300_530 0.1433741031 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]

Gene co-expression network

sample Hb_095397_010 Hb_095397_010 Hb_007810_040 Hb_007810_040 Hb_095397_010--Hb_007810_040 Hb_003906_120 Hb_003906_120 Hb_095397_010--Hb_003906_120 Hb_003304_080 Hb_003304_080 Hb_095397_010--Hb_003304_080 Hb_002232_180 Hb_002232_180 Hb_095397_010--Hb_002232_180 Hb_000050_120 Hb_000050_120 Hb_095397_010--Hb_000050_120 Hb_043637_010 Hb_043637_010 Hb_095397_010--Hb_043637_010 Hb_007810_040--Hb_003304_080 Hb_007178_010 Hb_007178_010 Hb_007810_040--Hb_007178_010 Hb_007810_040--Hb_002232_180 Hb_002078_040 Hb_002078_040 Hb_007810_040--Hb_002078_040 Hb_007810_040--Hb_043637_010 Hb_003906_110 Hb_003906_110 Hb_003906_120--Hb_003906_110 Hb_003906_120--Hb_002232_180 Hb_002609_260 Hb_002609_260 Hb_003906_120--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_003906_120--Hb_010931_100 Hb_004545_150 Hb_004545_150 Hb_003906_120--Hb_004545_150 Hb_003304_080--Hb_000050_120 Hb_003304_080--Hb_002078_040 Hb_003304_080--Hb_043637_010 Hb_012654_020 Hb_012654_020 Hb_003304_080--Hb_012654_020 Hb_002232_180--Hb_007178_010 Hb_002067_160 Hb_002067_160 Hb_002232_180--Hb_002067_160 Hb_002232_180--Hb_002609_260 Hb_004738_090 Hb_004738_090 Hb_002232_180--Hb_004738_090 Hb_005488_100 Hb_005488_100 Hb_002232_180--Hb_005488_100 Hb_000050_120--Hb_002078_040 Hb_000365_350 Hb_000365_350 Hb_000050_120--Hb_000365_350 Hb_002172_030 Hb_002172_030 Hb_000050_120--Hb_002172_030 Hb_000050_120--Hb_012654_020 Hb_000050_120--Hb_007810_040 Hb_170116_010 Hb_170116_010 Hb_043637_010--Hb_170116_010 Hb_003507_020 Hb_003507_020 Hb_043637_010--Hb_003507_020 Hb_000603_200 Hb_000603_200 Hb_043637_010--Hb_000603_200 Hb_001628_110 Hb_001628_110 Hb_043637_010--Hb_001628_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3073.04 47.2446 14.9412 93.0655 2906.62 1475.47
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1184.83 528.822 1154.68 175.295 17.2946

CAGE analysis