Hb_095399_010

Information

Type -
Description -
Location Contig95399: 4812-5948
Sequence    

Annotation

kegg
ID ath:ArthCp054
description petD; cytochrome b6/f complex subunit 4
nr
ID AAW78554.1
description cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
swissprot
ID P56774
description Cytochrome b6-f complex subunit 4 OS=Arabidopsis thaliana GN=petD PE=3 SV=1
trembl
ID Q5EG68
description Cytochrome b/f complex subunit IV (Fragment) OS=Sphagnum fimbriatum GN=petD PE=4 SV=1
Gene Ontology
ID GO:0009512
description cytochrome b6 f complex subunit iv

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095399_010 0.0 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
2 Hb_041476_010 0.2247371843 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
3 Hb_002224_050 0.2302325733 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
4 Hb_000541_010 0.2321636882 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_003245_010 0.2331433435 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_165958_010 0.2332306896 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_117252_010 0.2444888759 - - hypothetical protein [Pseudomonas tolaasii]
8 Hb_042795_010 0.2486872006 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_053575_010 0.2526763369 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_003401_040 0.2545564457 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
11 Hb_011114_050 0.2564503957 - - -
12 Hb_007659_010 0.2565842831 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
13 Hb_013874_010 0.257694692 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
14 Hb_017279_030 0.2592844633 - - -
15 Hb_028105_020 0.2648812625 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
16 Hb_006237_030 0.2651700768 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_162933_010 0.2654926649 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_003463_040 0.266759381 - - -
19 Hb_003694_070 0.2691203327 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_007111_020 0.2713548861 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]

Gene co-expression network

sample Hb_095399_010 Hb_095399_010 Hb_041476_010 Hb_041476_010 Hb_095399_010--Hb_041476_010 Hb_002224_050 Hb_002224_050 Hb_095399_010--Hb_002224_050 Hb_000541_010 Hb_000541_010 Hb_095399_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_095399_010--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_095399_010--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_095399_010--Hb_117252_010 Hb_041476_010--Hb_002224_050 Hb_041476_010--Hb_000541_010 Hb_041476_010--Hb_003245_010 Hb_041476_010--Hb_165958_010 Hb_041476_010--Hb_117252_010 Hb_007659_010 Hb_007659_010 Hb_041476_010--Hb_007659_010 Hb_002224_050--Hb_007659_010 Hb_002224_050--Hb_000541_010 Hb_002224_050--Hb_003245_010 Hb_002224_050--Hb_165958_010 Hb_002224_050--Hb_117252_010 Hb_000541_010--Hb_003245_010 Hb_000541_010--Hb_165958_010 Hb_000541_010--Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_000541_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_000541_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_000541_010--Hb_003401_040 Hb_003245_010--Hb_165958_010 Hb_003245_010--Hb_117252_010 Hb_003245_010--Hb_042795_010 Hb_003245_010--Hb_053575_010 Hb_003245_010--Hb_003401_040 Hb_165958_010--Hb_117252_010 Hb_165958_010--Hb_042795_010 Hb_165958_010--Hb_053575_010 Hb_165958_010--Hb_003401_040 Hb_117252_010--Hb_042795_010 Hb_117252_010--Hb_053575_010 Hb_117252_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_117252_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_117252_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_117252_010--Hb_017279_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.83105 0 15.3377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.444499 24.3742

CAGE analysis