Hb_095449_010

Information

Type -
Description -
Location Contig95449: 822-2791
Sequence    

Annotation

kegg
ID rcu:RCOM_1496000
description hypothetical protein
nr
ID XP_012090262.1
description PREDICTED: low-temperature-induced 65 kDa protein-like [Jatropha curcas]
swissprot
ID Q04980
description Low-temperature-induced 65 kDa protein OS=Arabidopsis thaliana GN=LTI65 PE=2 SV=2
trembl
ID A0A067JEN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26113 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095449_010 0.0 - - PREDICTED: low-temperature-induced 65 kDa protein-like [Jatropha curcas]
2 Hb_005474_050 0.2245879741 - - putative leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_002498_150 0.2343808834 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002092_140 0.2660351561 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
5 Hb_166828_010 0.2661981246 - - -
6 Hb_000320_170 0.2786664718 - - conserved hypothetical protein [Ricinus communis]
7 Hb_080873_010 0.2812142874 - - -
8 Hb_000002_280 0.2824464894 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
9 Hb_002836_030 0.2834805562 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_003582_050 0.2847563571 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
11 Hb_144813_010 0.2895112934 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
12 Hb_000300_240 0.2939706488 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
13 Hb_008890_030 0.2948083808 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_171693_010 0.2971590027 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
15 Hb_000892_040 0.3030525029 - - -
16 Hb_011888_010 0.3032104178 - - Receptor like protein 46, putative [Theobroma cacao]
17 Hb_071998_010 0.3050483023 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
18 Hb_000976_200 0.3058720739 - - -
19 Hb_010091_040 0.3161357879 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_034909_010 0.3190613227 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_095449_010 Hb_095449_010 Hb_005474_050 Hb_005474_050 Hb_095449_010--Hb_005474_050 Hb_002498_150 Hb_002498_150 Hb_095449_010--Hb_002498_150 Hb_002092_140 Hb_002092_140 Hb_095449_010--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_095449_010--Hb_166828_010 Hb_000320_170 Hb_000320_170 Hb_095449_010--Hb_000320_170 Hb_080873_010 Hb_080873_010 Hb_095449_010--Hb_080873_010 Hb_183193_010 Hb_183193_010 Hb_005474_050--Hb_183193_010 Hb_006717_020 Hb_006717_020 Hb_005474_050--Hb_006717_020 Hb_008078_020 Hb_008078_020 Hb_005474_050--Hb_008078_020 Hb_003867_030 Hb_003867_030 Hb_005474_050--Hb_003867_030 Hb_002218_060 Hb_002218_060 Hb_005474_050--Hb_002218_060 Hb_027337_050 Hb_027337_050 Hb_002498_150--Hb_027337_050 Hb_130579_050 Hb_130579_050 Hb_002498_150--Hb_130579_050 Hb_002025_240 Hb_002025_240 Hb_002498_150--Hb_002025_240 Hb_004191_030 Hb_004191_030 Hb_002498_150--Hb_004191_030 Hb_001899_040 Hb_001899_040 Hb_002498_150--Hb_001899_040 Hb_002571_050 Hb_002571_050 Hb_002498_150--Hb_002571_050 Hb_002092_140--Hb_166828_010 Hb_002092_140--Hb_080873_010 Hb_002092_140--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_002092_140--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_002092_140--Hb_003582_050 Hb_000002_280 Hb_000002_280 Hb_002092_140--Hb_000002_280 Hb_166828_010--Hb_000320_170 Hb_166828_010--Hb_002836_030 Hb_166828_010--Hb_003582_050 Hb_166828_010--Hb_080873_010 Hb_144813_010 Hb_144813_010 Hb_166828_010--Hb_144813_010 Hb_000320_170--Hb_002836_030 Hb_000320_170--Hb_003582_050 Hb_000320_170--Hb_144813_010 Hb_011888_010 Hb_011888_010 Hb_000320_170--Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_000320_170--Hb_071998_010 Hb_000892_040 Hb_000892_040 Hb_080873_010--Hb_000892_040 Hb_080873_010--Hb_000002_280 Hb_002284_040 Hb_002284_040 Hb_080873_010--Hb_002284_040 Hb_000501_180 Hb_000501_180 Hb_080873_010--Hb_000501_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108484 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.024971 0 0 0.0522096

CAGE analysis