Hb_095575_010

Information

Type -
Description -
Location Contig95575: 858-2579
Sequence    

Annotation

kegg
ID cic:CICLE_v100236471m
description hypothetical protein
nr
ID KDP28978.1
description hypothetical protein JCGZ_19529 [Jatropha curcas]
swissprot
ID F4KHI3
description Protein VARIATION IN COMPOUND TRIGGERED ROOT growth response OS=Arabidopsis thaliana GN=VICTR PE=1 SV=1
trembl
ID A0A067K1P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19529 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095575_010 0.0 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
2 Hb_033327_010 0.179698805 - - SYM8 [Pisum sativum]
3 Hb_000926_110 0.1798429829 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
4 Hb_000594_110 0.1965381866 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
5 Hb_003913_030 0.1977178397 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
6 Hb_000836_160 0.1992236676 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
7 Hb_186589_010 0.1996893319 - - PREDICTED: developmentally-regulated G-protein 3 [Nelumbo nucifera]
8 Hb_114674_010 0.2000600175 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_012258_020 0.2107514713 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_002445_130 0.2112236175 - - Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_000045_140 0.2112560193 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
12 Hb_113676_010 0.2112931444 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
13 Hb_029689_010 0.2124963828 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_002311_150 0.2153015519 - - Protein COBRA precursor, putative [Ricinus communis]
15 Hb_001277_190 0.2193516126 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
16 Hb_004586_130 0.2238092137 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000221_230 0.224719185 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
18 Hb_001486_210 0.2248492367 - - -
19 Hb_127404_010 0.2248545478 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
20 Hb_007136_010 0.2257371441 desease resistance Gene Name: UBA PREDICTED: ATPase WRNIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_095575_010 Hb_095575_010 Hb_033327_010 Hb_033327_010 Hb_095575_010--Hb_033327_010 Hb_000926_110 Hb_000926_110 Hb_095575_010--Hb_000926_110 Hb_000594_110 Hb_000594_110 Hb_095575_010--Hb_000594_110 Hb_003913_030 Hb_003913_030 Hb_095575_010--Hb_003913_030 Hb_000836_160 Hb_000836_160 Hb_095575_010--Hb_000836_160 Hb_186589_010 Hb_186589_010 Hb_095575_010--Hb_186589_010 Hb_000284_170 Hb_000284_170 Hb_033327_010--Hb_000284_170 Hb_007120_010 Hb_007120_010 Hb_033327_010--Hb_007120_010 Hb_033327_010--Hb_000594_110 Hb_005048_120 Hb_005048_120 Hb_033327_010--Hb_005048_120 Hb_000284_180 Hb_000284_180 Hb_033327_010--Hb_000284_180 Hb_010142_040 Hb_010142_040 Hb_033327_010--Hb_010142_040 Hb_010477_020 Hb_010477_020 Hb_000926_110--Hb_010477_020 Hb_022137_020 Hb_022137_020 Hb_000926_110--Hb_022137_020 Hb_184752_010 Hb_184752_010 Hb_000926_110--Hb_184752_010 Hb_101058_020 Hb_101058_020 Hb_000926_110--Hb_101058_020 Hb_000714_080 Hb_000714_080 Hb_000926_110--Hb_000714_080 Hb_158926_010 Hb_158926_010 Hb_000926_110--Hb_158926_010 Hb_041895_040 Hb_041895_040 Hb_000594_110--Hb_041895_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_003531_040 Hb_003531_040 Hb_003913_030--Hb_003531_040 Hb_000220_090 Hb_000220_090 Hb_003913_030--Hb_000220_090 Hb_006916_200 Hb_006916_200 Hb_003913_030--Hb_006916_200 Hb_000117_060 Hb_000117_060 Hb_003913_030--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_003913_030--Hb_056012_010 Hb_003637_020 Hb_003637_020 Hb_003913_030--Hb_003637_020 Hb_032920_040 Hb_032920_040 Hb_000836_160--Hb_032920_040 Hb_006538_030 Hb_006538_030 Hb_000836_160--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000836_160--Hb_000045_140 Hb_005976_040 Hb_005976_040 Hb_000836_160--Hb_005976_040 Hb_000532_030 Hb_000532_030 Hb_000836_160--Hb_000532_030 Hb_082225_010 Hb_082225_010 Hb_000836_160--Hb_082225_010 Hb_008406_080 Hb_008406_080 Hb_186589_010--Hb_008406_080 Hb_001486_210 Hb_001486_210 Hb_186589_010--Hb_001486_210 Hb_173271_010 Hb_173271_010 Hb_186589_010--Hb_173271_010 Hb_007894_020 Hb_007894_020 Hb_186589_010--Hb_007894_020 Hb_004994_250 Hb_004994_250 Hb_186589_010--Hb_004994_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12192 13.8504 7.91015 6.86437 0.600995 0.839942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.400011 1.15227 0 0.435308 0

CAGE analysis