Hb_096225_020

Information

Type transcription factor
Description TF Family: HB
Location Contig96225: 21435-23177
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11410g
description POPTRDRAFT_816434; hypothetical protein
nr
ID XP_012068141.1
description PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
swissprot
ID P46604
description Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1
trembl
ID A0A067L2U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63808: 21754-22326 , PASA_asmbl_63809: 22327-22439 , PASA_asmbl_63810: 22440-22604 , PASA_asmbl_63811: 22605-22823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096225_020 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
2 Hb_002983_030 0.1379930532 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
3 Hb_005396_080 0.1399306706 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
4 Hb_000340_430 0.1546060115 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_005298_010 0.1559554341 - - -
6 Hb_004453_140 0.1612551185 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
7 Hb_005867_040 0.1642520673 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
8 Hb_000350_090 0.1663885876 transcription factor TF Family: GeBP transcription regulator, putative [Ricinus communis]
9 Hb_003060_030 0.1707207298 - - conserved hypothetical protein 16 [Hevea brasiliensis]
10 Hb_000832_230 0.1741650487 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
11 Hb_000599_090 0.1751482831 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
12 Hb_001143_090 0.175213226 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
13 Hb_011457_170 0.1765104215 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
14 Hb_000363_010 0.1766814294 - - -
15 Hb_019762_010 0.1777579416 - - hypothetical protein JCGZ_12062 [Jatropha curcas]
16 Hb_000853_360 0.1788708378 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
17 Hb_000352_140 0.1804015868 - - -
18 Hb_010417_020 0.1840184315 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
19 Hb_005000_290 0.1846597523 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
20 Hb_003216_100 0.1849819463 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]

Gene co-expression network

sample Hb_096225_020 Hb_096225_020 Hb_002983_030 Hb_002983_030 Hb_096225_020--Hb_002983_030 Hb_005396_080 Hb_005396_080 Hb_096225_020--Hb_005396_080 Hb_000340_430 Hb_000340_430 Hb_096225_020--Hb_000340_430 Hb_005298_010 Hb_005298_010 Hb_096225_020--Hb_005298_010 Hb_004453_140 Hb_004453_140 Hb_096225_020--Hb_004453_140 Hb_005867_040 Hb_005867_040 Hb_096225_020--Hb_005867_040 Hb_002983_030--Hb_004453_140 Hb_000193_240 Hb_000193_240 Hb_002983_030--Hb_000193_240 Hb_003060_030 Hb_003060_030 Hb_002983_030--Hb_003060_030 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_001143_090 Hb_001143_090 Hb_002983_030--Hb_001143_090 Hb_002609_280 Hb_002609_280 Hb_005396_080--Hb_002609_280 Hb_000599_090 Hb_000599_090 Hb_005396_080--Hb_000599_090 Hb_002326_180 Hb_002326_180 Hb_005396_080--Hb_002326_180 Hb_003398_120 Hb_003398_120 Hb_005396_080--Hb_003398_120 Hb_000617_050 Hb_000617_050 Hb_005396_080--Hb_000617_050 Hb_102864_010 Hb_102864_010 Hb_000340_430--Hb_102864_010 Hb_000340_430--Hb_000599_090 Hb_001191_100 Hb_001191_100 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_001488_100 Hb_001488_100 Hb_000340_430--Hb_001488_100 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280 Hb_112399_010 Hb_112399_010 Hb_005298_010--Hb_112399_010 Hb_005625_060 Hb_005625_060 Hb_005298_010--Hb_005625_060 Hb_001184_110 Hb_001184_110 Hb_005298_010--Hb_001184_110 Hb_000436_010 Hb_000436_010 Hb_005298_010--Hb_000436_010 Hb_169246_010 Hb_169246_010 Hb_005298_010--Hb_169246_010 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_000032_260 Hb_000032_260 Hb_005867_040--Hb_000032_260 Hb_031403_010 Hb_031403_010 Hb_005867_040--Hb_031403_010 Hb_000085_300 Hb_000085_300 Hb_005867_040--Hb_000085_300 Hb_005276_100 Hb_005276_100 Hb_005867_040--Hb_005276_100 Hb_005867_040--Hb_000340_430 Hb_003751_120 Hb_003751_120 Hb_005867_040--Hb_003751_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.0098 31.9848 0.82533 0.941352 104.685 87.6268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.8712 275.019 195.044 40.4971 0.695447

CAGE analysis