Hb_096490_020

Information

Type -
Description -
Location Contig96490: 1277-2533
Sequence    

Annotation

kegg
ID rcu:RCOM_1608590
description hypothetical protein
nr
ID XP_012083656.1
description PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63873: 1417-2026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096490_020 0.0 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
2 Hb_140291_010 0.0891044965 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
3 Hb_002007_180 0.1233068774 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
4 Hb_184570_010 0.1266422726 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
5 Hb_007229_070 0.1288015012 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
6 Hb_150360_010 0.1352443311 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
7 Hb_003746_060 0.1420543519 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
8 Hb_000812_040 0.1432410097 - - zinc finger family protein [Populus trichocarpa]
9 Hb_000416_070 0.1443244838 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
10 Hb_073367_010 0.1454645767 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
11 Hb_005260_020 0.1483025051 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
12 Hb_001269_320 0.1487813686 - - 40S ribosomal protein S12A [Hevea brasiliensis]
13 Hb_041392_010 0.1503564656 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
14 Hb_000157_030 0.1526953651 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
15 Hb_136731_010 0.1560724296 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
16 Hb_003656_140 0.1574147285 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
17 Hb_001369_660 0.1581116179 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
18 Hb_027295_010 0.1582351316 - - 40S ribosomal protein S7, putative [Ricinus communis]
19 Hb_001769_080 0.1590376087 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
20 Hb_010691_060 0.1593458503 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]

Gene co-expression network

sample Hb_096490_020 Hb_096490_020 Hb_140291_010 Hb_140291_010 Hb_096490_020--Hb_140291_010 Hb_002007_180 Hb_002007_180 Hb_096490_020--Hb_002007_180 Hb_184570_010 Hb_184570_010 Hb_096490_020--Hb_184570_010 Hb_007229_070 Hb_007229_070 Hb_096490_020--Hb_007229_070 Hb_150360_010 Hb_150360_010 Hb_096490_020--Hb_150360_010 Hb_003746_060 Hb_003746_060 Hb_096490_020--Hb_003746_060 Hb_041392_010 Hb_041392_010 Hb_140291_010--Hb_041392_010 Hb_140291_010--Hb_002007_180 Hb_000416_070 Hb_000416_070 Hb_140291_010--Hb_000416_070 Hb_000812_040 Hb_000812_040 Hb_140291_010--Hb_000812_040 Hb_003656_140 Hb_003656_140 Hb_140291_010--Hb_003656_140 Hb_005260_020 Hb_005260_020 Hb_002007_180--Hb_005260_020 Hb_002737_070 Hb_002737_070 Hb_002007_180--Hb_002737_070 Hb_002007_180--Hb_000812_040 Hb_005714_130 Hb_005714_130 Hb_002007_180--Hb_005714_130 Hb_000080_060 Hb_000080_060 Hb_002007_180--Hb_000080_060 Hb_184570_010--Hb_000416_070 Hb_003011_040 Hb_003011_040 Hb_184570_010--Hb_003011_040 Hb_003363_120 Hb_003363_120 Hb_184570_010--Hb_003363_120 Hb_003878_010 Hb_003878_010 Hb_184570_010--Hb_003878_010 Hb_000155_180 Hb_000155_180 Hb_184570_010--Hb_000155_180 Hb_004223_220 Hb_004223_220 Hb_184570_010--Hb_004223_220 Hb_001269_320 Hb_001269_320 Hb_007229_070--Hb_001269_320 Hb_001369_660 Hb_001369_660 Hb_007229_070--Hb_001369_660 Hb_004440_050 Hb_004440_050 Hb_007229_070--Hb_004440_050 Hb_011828_050 Hb_011828_050 Hb_007229_070--Hb_011828_050 Hb_000157_030 Hb_000157_030 Hb_007229_070--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_007229_070--Hb_003266_050 Hb_150360_010--Hb_003656_140 Hb_137403_010 Hb_137403_010 Hb_150360_010--Hb_137403_010 Hb_150360_010--Hb_041392_010 Hb_004934_070 Hb_004934_070 Hb_150360_010--Hb_004934_070 Hb_000183_040 Hb_000183_040 Hb_150360_010--Hb_000183_040 Hb_002374_020 Hb_002374_020 Hb_150360_010--Hb_002374_020 Hb_000617_320 Hb_000617_320 Hb_003746_060--Hb_000617_320 Hb_000094_020 Hb_000094_020 Hb_003746_060--Hb_000094_020 Hb_000193_350 Hb_000193_350 Hb_003746_060--Hb_000193_350 Hb_029888_020 Hb_029888_020 Hb_003746_060--Hb_029888_020 Hb_011257_010 Hb_011257_010 Hb_003746_060--Hb_011257_010 Hb_000995_050 Hb_000995_050 Hb_003746_060--Hb_000995_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.563 2.0447 2.2941 2.27246 2.48573 9.43525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34866 4.82946 0.98344 2.07072 0.216782

CAGE analysis