Hb_096671_010

Information

Type -
Description -
Location Contig96671: 35-1440
Sequence    

Annotation

kegg
ID pda:103700131
description uncharacterized LOC103700131
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096671_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_000904_100 0.0021310726 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
3 Hb_001462_020 0.0271661251 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
4 Hb_071586_010 0.0275117606 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
5 Hb_001956_030 0.2256248197 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
6 Hb_089173_010 0.2284900087 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
7 Hb_003777_010 0.2576783186 - - -
8 Hb_125847_010 0.2797635868 - - -
9 Hb_000430_010 0.2799185038 - - -
10 Hb_162126_010 0.2812265554 - - -
11 Hb_001221_370 0.2847929071 - - hypothetical protein MIMGU_mgv1a020064mg, partial [Erythranthe guttata]
12 Hb_168311_010 0.2860668357 - - -
13 Hb_005285_010 0.2880620587 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
14 Hb_026048_060 0.290088291 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_000139_440 0.2914174771 - - unnamed protein product [Coffea canephora]
16 Hb_008246_050 0.2936936892 - - -
17 Hb_005799_040 0.2937071321 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
18 Hb_000590_020 0.2944950752 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
19 Hb_005045_040 0.2954494581 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
20 Hb_048874_010 0.2955896317 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]

Gene co-expression network

sample Hb_096671_010 Hb_096671_010 Hb_000904_100 Hb_000904_100 Hb_096671_010--Hb_000904_100 Hb_001462_020 Hb_001462_020 Hb_096671_010--Hb_001462_020 Hb_071586_010 Hb_071586_010 Hb_096671_010--Hb_071586_010 Hb_001956_030 Hb_001956_030 Hb_096671_010--Hb_001956_030 Hb_089173_010 Hb_089173_010 Hb_096671_010--Hb_089173_010 Hb_003777_010 Hb_003777_010 Hb_096671_010--Hb_003777_010 Hb_000904_100--Hb_001462_020 Hb_000904_100--Hb_071586_010 Hb_000904_100--Hb_001956_030 Hb_000904_100--Hb_089173_010 Hb_000904_100--Hb_003777_010 Hb_001462_020--Hb_071586_010 Hb_001462_020--Hb_003777_010 Hb_001462_020--Hb_001956_030 Hb_001462_020--Hb_089173_010 Hb_071586_010--Hb_003777_010 Hb_071586_010--Hb_001956_030 Hb_071586_010--Hb_089173_010 Hb_054362_010 Hb_054362_010 Hb_001956_030--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_001956_030--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_001956_030--Hb_169574_010 Hb_001956_030--Hb_089173_010 Hb_048874_010 Hb_048874_010 Hb_001956_030--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_001956_030--Hb_005799_040 Hb_006806_010 Hb_006806_010 Hb_089173_010--Hb_006806_010 Hb_008246_050 Hb_008246_050 Hb_089173_010--Hb_008246_050 Hb_089173_010--Hb_005799_040 Hb_089173_010--Hb_048874_010 Hb_089173_010--Hb_169574_010 Hb_005045_040 Hb_005045_040 Hb_003777_010--Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_003777_010--Hb_001338_060 Hb_006478_170 Hb_006478_170 Hb_003777_010--Hb_006478_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0145785 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0586957 0.0252615 0

CAGE analysis