Hb_096811_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig96811: 3330-4043
Sequence    

Annotation

kegg
ID vvi:100254907
description probable disease resistance protein At1g61190
nr
ID XP_010660299.1
description PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
swissprot
ID P60838
description Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at1g61190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096811_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
2 Hb_000093_150 0.207973398 - - 6-phosphogluconolactonase, putative [Ricinus communis]
3 Hb_012553_020 0.223196229 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
4 Hb_019893_010 0.2282590746 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
5 Hb_000077_330 0.2290213772 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
6 Hb_000343_100 0.2303282418 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
7 Hb_008749_090 0.2325154914 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
8 Hb_000928_040 0.2369165319 - - cytochrome P450, putative [Ricinus communis]
9 Hb_006916_190 0.2386834228 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000067_010 0.2420095673 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
11 Hb_004462_010 0.2425248339 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
12 Hb_182680_010 0.242597319 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
13 Hb_000556_110 0.2495417884 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
14 Hb_001206_090 0.2505751486 - - pyruvate decarboxylase [Hevea brasiliensis]
15 Hb_000915_070 0.2506532607 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000384_050 0.2518253022 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
17 Hb_000483_110 0.2518503232 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
18 Hb_005389_190 0.2530934961 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_011618_040 0.2541893095 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009823_010 0.2560035089 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]

Gene co-expression network

sample Hb_096811_010 Hb_096811_010 Hb_000093_150 Hb_000093_150 Hb_096811_010--Hb_000093_150 Hb_012553_020 Hb_012553_020 Hb_096811_010--Hb_012553_020 Hb_019893_010 Hb_019893_010 Hb_096811_010--Hb_019893_010 Hb_000077_330 Hb_000077_330 Hb_096811_010--Hb_000077_330 Hb_000343_100 Hb_000343_100 Hb_096811_010--Hb_000343_100 Hb_008749_090 Hb_008749_090 Hb_096811_010--Hb_008749_090 Hb_000928_040 Hb_000928_040 Hb_000093_150--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000093_150--Hb_127886_010 Hb_000645_210 Hb_000645_210 Hb_000093_150--Hb_000645_210 Hb_004462_010 Hb_004462_010 Hb_000093_150--Hb_004462_010 Hb_003517_020 Hb_003517_020 Hb_000093_150--Hb_003517_020 Hb_002304_140 Hb_002304_140 Hb_000093_150--Hb_002304_140 Hb_001504_220 Hb_001504_220 Hb_012553_020--Hb_001504_220 Hb_004855_050 Hb_004855_050 Hb_012553_020--Hb_004855_050 Hb_011063_060 Hb_011063_060 Hb_012553_020--Hb_011063_060 Hb_012553_020--Hb_000077_330 Hb_008768_010 Hb_008768_010 Hb_012553_020--Hb_008768_010 Hb_000984_080 Hb_000984_080 Hb_012553_020--Hb_000984_080 Hb_000205_210 Hb_000205_210 Hb_019893_010--Hb_000205_210 Hb_032050_050 Hb_032050_050 Hb_019893_010--Hb_032050_050 Hb_000140_260 Hb_000140_260 Hb_019893_010--Hb_000140_260 Hb_000497_120 Hb_000497_120 Hb_019893_010--Hb_000497_120 Hb_000939_030 Hb_000939_030 Hb_019893_010--Hb_000939_030 Hb_031340_030 Hb_031340_030 Hb_019893_010--Hb_031340_030 Hb_018591_050 Hb_018591_050 Hb_000077_330--Hb_018591_050 Hb_000077_330--Hb_032050_050 Hb_008692_010 Hb_008692_010 Hb_000077_330--Hb_008692_010 Hb_001649_040 Hb_001649_040 Hb_000077_330--Hb_001649_040 Hb_031042_030 Hb_031042_030 Hb_000077_330--Hb_031042_030 Hb_003813_120 Hb_003813_120 Hb_000343_100--Hb_003813_120 Hb_000384_050 Hb_000384_050 Hb_000343_100--Hb_000384_050 Hb_004143_120 Hb_004143_120 Hb_000343_100--Hb_004143_120 Hb_000181_020 Hb_000181_020 Hb_000343_100--Hb_000181_020 Hb_000347_110 Hb_000347_110 Hb_000343_100--Hb_000347_110 Hb_000098_310 Hb_000098_310 Hb_000343_100--Hb_000098_310 Hb_003517_010 Hb_003517_010 Hb_008749_090--Hb_003517_010 Hb_149515_010 Hb_149515_010 Hb_008749_090--Hb_149515_010 Hb_006916_190 Hb_006916_190 Hb_008749_090--Hb_006916_190 Hb_001780_130 Hb_001780_130 Hb_008749_090--Hb_001780_130 Hb_008749_090--Hb_000343_100 Hb_000816_020 Hb_000816_020 Hb_008749_090--Hb_000816_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.33362 2.43253 0.159374 0.971312 0.0982883 1.4806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.078714 0.0618822 0.995978 10.264 0.981474

CAGE analysis