Hb_096819_010

Information

Type -
Description -
Location Contig96819: 372-1657
Sequence    

Annotation

kegg
ID rcu:RCOM_0834990
description hypothetical protein
nr
ID XP_012093138.1
description PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16344 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63921: 1093-1678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096819_010 0.0 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
2 Hb_030545_030 0.0639212478 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
3 Hb_002903_140 0.0693618044 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
4 Hb_008165_030 0.0710514205 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
5 Hb_000958_150 0.0718261241 - - Actin, putative [Ricinus communis]
6 Hb_011920_020 0.0748749339 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
7 Hb_002902_020 0.08163573 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
8 Hb_003470_030 0.0837026567 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
9 Hb_002282_060 0.0849186932 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_003895_020 0.0852149107 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
11 Hb_007017_070 0.085522783 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_000227_310 0.0860680192 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
13 Hb_001674_040 0.0866654449 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
14 Hb_155159_010 0.0876936373 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
15 Hb_000059_200 0.0917188502 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
16 Hb_000264_080 0.0917662913 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
17 Hb_000205_130 0.0931890733 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_010287_030 0.095694447 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002081_120 0.0986097924 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
20 Hb_000345_490 0.0994580005 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_096819_010 Hb_096819_010 Hb_030545_030 Hb_030545_030 Hb_096819_010--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_096819_010--Hb_002903_140 Hb_008165_030 Hb_008165_030 Hb_096819_010--Hb_008165_030 Hb_000958_150 Hb_000958_150 Hb_096819_010--Hb_000958_150 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_030545_030--Hb_008165_030 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_002903_140--Hb_007017_070 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_002284_170 Hb_002284_170 Hb_000958_150--Hb_002284_170 Hb_056987_010 Hb_056987_010 Hb_000958_150--Hb_056987_010 Hb_000958_150--Hb_102438_030 Hb_000958_150--Hb_030545_030 Hb_002092_070 Hb_002092_070 Hb_000958_150--Hb_002092_070 Hb_155159_010 Hb_155159_010 Hb_011920_020--Hb_155159_010 Hb_011920_020--Hb_001674_040 Hb_001221_090 Hb_001221_090 Hb_011920_020--Hb_001221_090 Hb_010661_020 Hb_010661_020 Hb_011920_020--Hb_010661_020 Hb_011920_020--Hb_002092_070 Hb_000230_430 Hb_000230_430 Hb_002902_020--Hb_000230_430 Hb_001231_030 Hb_001231_030 Hb_002902_020--Hb_001231_030 Hb_000345_490 Hb_000345_490 Hb_002902_020--Hb_000345_490 Hb_002282_060 Hb_002282_060 Hb_002902_020--Hb_002282_060 Hb_000264_070 Hb_000264_070 Hb_002902_020--Hb_000264_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5862 25.7033 17.7419 12.412 10.3715 14.8498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09016 3.62644 4.30795 8.19226 8.895

CAGE analysis