Hb_096878_010

Information

Type -
Description -
Location Contig96878: 953-1492
Sequence    

Annotation

kegg
ID pop:POPTR_0112s002001
description hypothetical protein
nr
ID XP_006388725.1
description hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DZI2
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0112s002001g PE=4 SV=1
Gene Ontology
ID GO:0016021
description wall-associated kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096878_010 0.0 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
2 Hb_000635_190 0.032382592 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
3 Hb_185830_090 0.0688820696 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006721_060 0.0727617848 - - RnaseH (mitochondrion) [Malus domestica]
5 Hb_000172_310 0.0879520091 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
6 Hb_003050_170 0.0887538785 - - conserved hypothetical protein [Ricinus communis]
7 Hb_133508_020 0.1127457983 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
8 Hb_015934_100 0.125875259 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
9 Hb_000975_090 0.1308626112 - - Zeamatin precursor, putative [Ricinus communis]
10 Hb_055147_020 0.13229052 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
11 Hb_014549_010 0.1326074737 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
12 Hb_000060_080 0.1359398146 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
13 Hb_004096_140 0.1386579888 - - Lipase, putative [Ricinus communis]
14 Hb_003712_010 0.1393761474 - - protein binding protein, putative [Ricinus communis]
15 Hb_006916_120 0.1399525537 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
16 Hb_170632_010 0.1426298513 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_004218_220 0.1445847743 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_004154_010 0.1474180084 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
19 Hb_000509_090 0.1489831029 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_003878_020 0.1497732283 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_096878_010 Hb_096878_010 Hb_000635_190 Hb_000635_190 Hb_096878_010--Hb_000635_190 Hb_185830_090 Hb_185830_090 Hb_096878_010--Hb_185830_090 Hb_006721_060 Hb_006721_060 Hb_096878_010--Hb_006721_060 Hb_000172_310 Hb_000172_310 Hb_096878_010--Hb_000172_310 Hb_003050_170 Hb_003050_170 Hb_096878_010--Hb_003050_170 Hb_133508_020 Hb_133508_020 Hb_096878_010--Hb_133508_020 Hb_000635_190--Hb_006721_060 Hb_000635_190--Hb_003050_170 Hb_000635_190--Hb_185830_090 Hb_000635_190--Hb_000172_310 Hb_004096_140 Hb_004096_140 Hb_000635_190--Hb_004096_140 Hb_185830_090--Hb_003050_170 Hb_004154_010 Hb_004154_010 Hb_185830_090--Hb_004154_010 Hb_185830_090--Hb_133508_020 Hb_185830_090--Hb_006721_060 Hb_006721_060--Hb_004096_140 Hb_006721_060--Hb_003050_170 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_004218_220 Hb_004218_220 Hb_000172_310--Hb_004218_220 Hb_055147_020 Hb_055147_020 Hb_000172_310--Hb_055147_020 Hb_000172_310--Hb_004096_140 Hb_008725_030 Hb_008725_030 Hb_003050_170--Hb_008725_030 Hb_003968_010 Hb_003968_010 Hb_003050_170--Hb_003968_010 Hb_006916_120 Hb_006916_120 Hb_133508_020--Hb_006916_120 Hb_000152_590 Hb_000152_590 Hb_133508_020--Hb_000152_590 Hb_000975_090 Hb_000975_090 Hb_133508_020--Hb_000975_090 Hb_010672_010 Hb_010672_010 Hb_133508_020--Hb_010672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104806 0.197256 0.27548 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0769856 0

CAGE analysis