Hb_096962_020

Information

Type -
Description -
Location Contig96962: 7360-9232
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096962_020 0.0 - - -
2 Hb_011716_040 0.1464337149 - - -
3 Hb_027380_160 0.1465627149 - - -
4 Hb_000340_010 0.1487443692 - - -
5 Hb_000033_050 0.1592737788 - - -
6 Hb_001452_140 0.1770206526 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
7 Hb_153150_010 0.1771384184 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
8 Hb_001158_030 0.1776440465 - - -
9 Hb_001186_060 0.1855001401 - - -
10 Hb_003462_030 0.1871297634 - - hypothetical protein UMN_5210_01, partial [Pinus radiata]
11 Hb_001930_070 0.1894397752 - - -
12 Hb_030414_050 0.1896969304 - - -
13 Hb_005714_040 0.1919696019 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005389_140 0.1948143626 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
15 Hb_027556_010 0.1971120373 - - -
16 Hb_000140_150 0.1972913212 - - -
17 Hb_006499_010 0.1978817225 - - -
18 Hb_024399_010 0.1978860832 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
19 Hb_011930_010 0.198979765 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
20 Hb_002387_020 0.1990855643 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]

Gene co-expression network

sample Hb_096962_020 Hb_096962_020 Hb_011716_040 Hb_011716_040 Hb_096962_020--Hb_011716_040 Hb_027380_160 Hb_027380_160 Hb_096962_020--Hb_027380_160 Hb_000340_010 Hb_000340_010 Hb_096962_020--Hb_000340_010 Hb_000033_050 Hb_000033_050 Hb_096962_020--Hb_000033_050 Hb_001452_140 Hb_001452_140 Hb_096962_020--Hb_001452_140 Hb_153150_010 Hb_153150_010 Hb_096962_020--Hb_153150_010 Hb_027556_010 Hb_027556_010 Hb_011716_040--Hb_027556_010 Hb_001158_030 Hb_001158_030 Hb_011716_040--Hb_001158_030 Hb_011716_040--Hb_000033_050 Hb_006499_010 Hb_006499_010 Hb_011716_040--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_011716_040--Hb_001186_060 Hb_000014_100 Hb_000014_100 Hb_011716_040--Hb_000014_100 Hb_003682_050 Hb_003682_050 Hb_027380_160--Hb_003682_050 Hb_063100_010 Hb_063100_010 Hb_027380_160--Hb_063100_010 Hb_001926_040 Hb_001926_040 Hb_027380_160--Hb_001926_040 Hb_024399_010 Hb_024399_010 Hb_027380_160--Hb_024399_010 Hb_027380_160--Hb_011716_040 Hb_027380_160--Hb_000340_010 Hb_000465_310 Hb_000465_310 Hb_000340_010--Hb_000465_310 Hb_000340_010--Hb_153150_010 Hb_000340_010--Hb_024399_010 Hb_017987_070 Hb_017987_070 Hb_000340_010--Hb_017987_070 Hb_000033_050--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000033_050--Hb_001930_070 Hb_000163_290 Hb_000163_290 Hb_000033_050--Hb_000163_290 Hb_000033_050--Hb_001186_060 Hb_000371_110 Hb_000371_110 Hb_000033_050--Hb_000371_110 Hb_002387_020 Hb_002387_020 Hb_001452_140--Hb_002387_020 Hb_019973_030 Hb_019973_030 Hb_001452_140--Hb_019973_030 Hb_003751_110 Hb_003751_110 Hb_001452_140--Hb_003751_110 Hb_004226_020 Hb_004226_020 Hb_001452_140--Hb_004226_020 Hb_001584_310 Hb_001584_310 Hb_001452_140--Hb_001584_310 Hb_005333_020 Hb_005333_020 Hb_153150_010--Hb_005333_020 Hb_005147_110 Hb_005147_110 Hb_153150_010--Hb_005147_110 Hb_005314_010 Hb_005314_010 Hb_153150_010--Hb_005314_010 Hb_008725_250 Hb_008725_250 Hb_153150_010--Hb_008725_250 Hb_000029_160 Hb_000029_160 Hb_153150_010--Hb_000029_160 Hb_153150_010--Hb_000465_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37257 0.570574 0.178029 0 1.20221 0.346157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.750828 0.295153 0.529774 0.239638 0

CAGE analysis