Hb_097007_010

Information

Type -
Description -
Location Contig97007: 4375-5475
Sequence    

Annotation

kegg
ID crb:CARUB_v10018269mg
description hypothetical protein
nr
ID XP_006292074.1
description hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
swissprot
ID Q9M2F1
description 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2
trembl
ID R0FQY1
description 40S ribosomal protein S27 (Fragment) OS=Capsella rubella GN=CARUB_v10018269mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s27-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63940: 4357-5452
cDNA
(Sanger)
(ID:Location)		 022_B11.ab1: 4365-5452 , 035_B13.ab1: 4369-5309 , 053_O08.ab1: 4373-5396

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097007_010 0.0 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
2 Hb_000236_460 0.085781671 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
3 Hb_003549_020 0.0886922541 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002320_060 0.0899625859 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
5 Hb_026398_010 0.0932708726 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
6 Hb_011311_010 0.0995478444 - - 60S ribosomal protein L27C [Hevea brasiliensis]
7 Hb_000085_330 0.1012380008 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
8 Hb_000645_190 0.1076586854 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
9 Hb_007943_140 0.1083498773 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
10 Hb_000915_120 0.1106741486 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
11 Hb_002006_130 0.1106767576 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
12 Hb_007575_070 0.1113841628 - - Histone H3.2 [Glycine soja]
13 Hb_004735_050 0.1118704303 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
14 Hb_000163_130 0.1125905636 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
15 Hb_001214_140 0.1126065744 - - 60S ribosomal protein L27a, putative [Ricinus communis]
16 Hb_003638_080 0.113020893 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
17 Hb_007497_030 0.1161154574 - - mutt domain protein, putative [Ricinus communis]
18 Hb_187083_010 0.1168567556 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
19 Hb_172221_010 0.1168621557 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
20 Hb_004724_160 0.1173016597 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]

Gene co-expression network

sample Hb_097007_010 Hb_097007_010 Hb_000236_460 Hb_000236_460 Hb_097007_010--Hb_000236_460 Hb_003549_020 Hb_003549_020 Hb_097007_010--Hb_003549_020 Hb_002320_060 Hb_002320_060 Hb_097007_010--Hb_002320_060 Hb_026398_010 Hb_026398_010 Hb_097007_010--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_097007_010--Hb_011311_010 Hb_000085_330 Hb_000085_330 Hb_097007_010--Hb_000085_330 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_000645_190 Hb_000645_190 Hb_003549_020--Hb_000645_190 Hb_003549_020--Hb_002320_060 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_007497_030 Hb_007497_030 Hb_003549_020--Hb_007497_030 Hb_002320_060--Hb_000236_460 Hb_002320_060--Hb_187083_010 Hb_002320_060--Hb_000645_190 Hb_030565_040 Hb_030565_040 Hb_002320_060--Hb_030565_040 Hb_172221_010 Hb_172221_010 Hb_026398_010--Hb_172221_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_026398_010--Hb_002588_010 Hb_011311_010--Hb_002660_030 Hb_011311_010--Hb_002588_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_000163_130 Hb_000163_130 Hb_000085_330--Hb_000163_130 Hb_002835_320 Hb_002835_320 Hb_000085_330--Hb_002835_320 Hb_148930_010 Hb_148930_010 Hb_000085_330--Hb_148930_010 Hb_000085_330--Hb_001123_120 Hb_183086_040 Hb_183086_040 Hb_000085_330--Hb_183086_040 Hb_000085_330--Hb_000645_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
211.371 197.832 116.15 254.929 199.523 445.098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
804.971 1856.49 491.007 210.484 57.7197

CAGE analysis