Hb_097007_020

Information

Type -
Description -
Location Contig97007: 11966-14406
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15950g
description POPTRDRAFT_757799; MutT/nudix family protein
nr
ID XP_011020913.1
description PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
swissprot
ID Q93ZY7
description Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1
trembl
ID B9GYV1
description MutT/nudix family protein OS=Populus trichocarpa GN=POPTR_0003s15950g PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63941: 11251-11608 , PASA_asmbl_63943: 14001-14309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097007_020 0.0 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
2 Hb_035677_010 0.0819525103 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004899_360 0.0926770175 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
4 Hb_000247_150 0.1075639492 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
5 Hb_012496_010 0.1077953384 - - kinase, putative [Ricinus communis]
6 Hb_006907_020 0.11186583 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
7 Hb_000571_030 0.1139000478 - - ammonium transporter, putative [Ricinus communis]
8 Hb_008202_020 0.1213937558 - - receptor serine/threonine kinase, putative [Ricinus communis]
9 Hb_008143_020 0.1278066149 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
10 Hb_001104_270 0.1304554818 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
11 Hb_003811_030 0.1306655443 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
12 Hb_029664_010 0.1316479137 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001619_140 0.1328924891 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_000656_350 0.137959737 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
15 Hb_013720_010 0.1398633158 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
16 Hb_000032_230 0.1431242172 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
17 Hb_009476_010 0.1438223069 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
18 Hb_004109_240 0.1442147853 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_134022_010 0.1447969766 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_032260_100 0.1473173748 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]

Gene co-expression network

sample Hb_097007_020 Hb_097007_020 Hb_035677_010 Hb_035677_010 Hb_097007_020--Hb_035677_010 Hb_004899_360 Hb_004899_360 Hb_097007_020--Hb_004899_360 Hb_000247_150 Hb_000247_150 Hb_097007_020--Hb_000247_150 Hb_012496_010 Hb_012496_010 Hb_097007_020--Hb_012496_010 Hb_006907_020 Hb_006907_020 Hb_097007_020--Hb_006907_020 Hb_000571_030 Hb_000571_030 Hb_097007_020--Hb_000571_030 Hb_035677_010--Hb_000247_150 Hb_035677_010--Hb_012496_010 Hb_035677_010--Hb_000571_030 Hb_013720_010 Hb_013720_010 Hb_035677_010--Hb_013720_010 Hb_035677_010--Hb_004899_360 Hb_008202_020 Hb_008202_020 Hb_004899_360--Hb_008202_020 Hb_004109_240 Hb_004109_240 Hb_004899_360--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_004899_360--Hb_008810_030 Hb_001619_140 Hb_001619_140 Hb_004899_360--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_004899_360--Hb_002010_020 Hb_000247_150--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_000247_150--Hb_000331_710 Hb_039650_030 Hb_039650_030 Hb_000247_150--Hb_039650_030 Hb_000247_150--Hb_012496_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_012496_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_012496_010--Hb_000422_050 Hb_029664_010 Hb_029664_010 Hb_006907_020--Hb_029664_010 Hb_006907_020--Hb_035677_010 Hb_001004_010 Hb_001004_010 Hb_006907_020--Hb_001004_010 Hb_006907_020--Hb_004899_360 Hb_000656_350 Hb_000656_350 Hb_000571_030--Hb_000656_350 Hb_000571_030--Hb_001619_140 Hb_000032_150 Hb_000032_150 Hb_000571_030--Hb_000032_150 Hb_001257_040 Hb_001257_040 Hb_000571_030--Hb_001257_040 Hb_007858_020 Hb_007858_020 Hb_000571_030--Hb_007858_020 Hb_029622_080 Hb_029622_080 Hb_000571_030--Hb_029622_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.54071 2.75516 1.22828 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0896367 0 0 0.172593 0.966195

CAGE analysis