Hb_097185_010

Information

Type -
Description -
Location Contig97185: 2-1874
Sequence    

Annotation

kegg
ID rcu:RCOM_1080720
description GTP binding protein, putative
nr
ID XP_012085661.1
description PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
swissprot
ID Q3MG79
description Putative ribosome biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsgA PE=3 SV=1
trembl
ID A0A067K4R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17947 PE=3 SV=1
Gene Ontology
ID GO:0003924
description ribosome biogenesis gtpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63963: 1-1728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097185_010 0.0 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
2 Hb_000958_050 0.0760579389 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
3 Hb_000856_070 0.0807147955 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
4 Hb_002174_030 0.0820082894 - - transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_000083_070 0.0846254514 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
6 Hb_011689_030 0.084824249 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
7 Hb_002350_010 0.085244577 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
8 Hb_000934_210 0.0860839634 - - suppressor of ty, putative [Ricinus communis]
9 Hb_007472_090 0.0863895995 - - unnamed protein product [Coffea canephora]
10 Hb_012244_020 0.0865280195 - - calpain, putative [Ricinus communis]
11 Hb_005701_050 0.0897855131 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_000795_040 0.0906540645 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
13 Hb_000906_100 0.0907995966 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
14 Hb_000473_110 0.0908414186 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
15 Hb_005488_170 0.0916173329 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
16 Hb_000003_410 0.0918056287 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
17 Hb_027472_220 0.0927951532 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
18 Hb_005186_040 0.0929104442 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
19 Hb_001648_020 0.093423508 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
20 Hb_002600_060 0.0952064249 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_097185_010 Hb_097185_010 Hb_000958_050 Hb_000958_050 Hb_097185_010--Hb_000958_050 Hb_000856_070 Hb_000856_070 Hb_097185_010--Hb_000856_070 Hb_002174_030 Hb_002174_030 Hb_097185_010--Hb_002174_030 Hb_000083_070 Hb_000083_070 Hb_097185_010--Hb_000083_070 Hb_011689_030 Hb_011689_030 Hb_097185_010--Hb_011689_030 Hb_002350_010 Hb_002350_010 Hb_097185_010--Hb_002350_010 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110 Hb_000656_060 Hb_000656_060 Hb_000856_070--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_000856_070--Hb_012244_020 Hb_011021_050 Hb_011021_050 Hb_000856_070--Hb_011021_050 Hb_000925_090 Hb_000925_090 Hb_000856_070--Hb_000925_090 Hb_005408_030 Hb_005408_030 Hb_000856_070--Hb_005408_030 Hb_002174_030--Hb_011689_030 Hb_000025_320 Hb_000025_320 Hb_002174_030--Hb_000025_320 Hb_005357_260 Hb_005357_260 Hb_002174_030--Hb_005357_260 Hb_001191_120 Hb_001191_120 Hb_002174_030--Hb_001191_120 Hb_000099_040 Hb_000099_040 Hb_002174_030--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_002174_030--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000083_070--Hb_000925_090 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_000083_070--Hb_012244_020 Hb_000665_230 Hb_000665_230 Hb_011689_030--Hb_000665_230 Hb_011689_030--Hb_005357_260 Hb_011689_030--Hb_000176_100 Hb_011689_030--Hb_001133_030 Hb_009486_170 Hb_009486_170 Hb_011689_030--Hb_009486_170 Hb_011689_030--Hb_000958_050 Hb_002350_010--Hb_001191_120 Hb_027472_220 Hb_027472_220 Hb_002350_010--Hb_027472_220 Hb_000671_070 Hb_000671_070 Hb_002350_010--Hb_000671_070 Hb_002350_010--Hb_000025_710 Hb_000473_110 Hb_000473_110 Hb_002350_010--Hb_000473_110 Hb_000563_130 Hb_000563_130 Hb_002350_010--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72696 14.7397 9.41825 5.26308 10.4715 6.5547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62 6.02169 7.95616 12.4888 17.4643

CAGE analysis