Hb_097218_010

Information

Type -
Description -
Location Contig97218: 8094-10654
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01370g
description hypothetical protein
nr
ID XP_012070494.1
description PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02765 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger b-box domain containing protein 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63970: 7837-10552 , PASA_asmbl_63971: 8006-10618
cDNA
(Sanger)
(ID:Location)		 025_A07.ab1: 7837-9896

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097218_010 0.0 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
2 Hb_033312_150 0.080371147 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
3 Hb_001959_020 0.0810770117 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
4 Hb_001668_010 0.0883226968 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
5 Hb_007558_070 0.0951398758 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
6 Hb_023226_080 0.097490081 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
7 Hb_128743_010 0.0975013934 - - RNA-binding protein, putative [Ricinus communis]
8 Hb_154114_010 0.0988065494 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
9 Hb_001104_160 0.0991753261 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
10 Hb_000982_050 0.0993879217 - - PREDICTED: uncharacterized protein LOC105643124 isoform X1 [Jatropha curcas]
11 Hb_001195_320 0.1018986199 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
12 Hb_001860_040 0.102423421 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
13 Hb_001575_010 0.1038953181 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005730_090 0.1052552002 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
15 Hb_000345_140 0.1057645527 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
16 Hb_021297_050 0.1066292842 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
17 Hb_000170_150 0.1067240058 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
18 Hb_000412_010 0.1067253274 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000614_210 0.107300087 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
20 Hb_004195_200 0.1074294655 - - glycosyl transferase family 1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_097218_010 Hb_097218_010 Hb_033312_150 Hb_033312_150 Hb_097218_010--Hb_033312_150 Hb_001959_020 Hb_001959_020 Hb_097218_010--Hb_001959_020 Hb_001668_010 Hb_001668_010 Hb_097218_010--Hb_001668_010 Hb_007558_070 Hb_007558_070 Hb_097218_010--Hb_007558_070 Hb_023226_080 Hb_023226_080 Hb_097218_010--Hb_023226_080 Hb_128743_010 Hb_128743_010 Hb_097218_010--Hb_128743_010 Hb_000483_380 Hb_000483_380 Hb_033312_150--Hb_000483_380 Hb_003666_020 Hb_003666_020 Hb_033312_150--Hb_003666_020 Hb_000352_070 Hb_000352_070 Hb_033312_150--Hb_000352_070 Hb_158604_010 Hb_158604_010 Hb_033312_150--Hb_158604_010 Hb_000343_110 Hb_000343_110 Hb_033312_150--Hb_000343_110 Hb_000176_100 Hb_000176_100 Hb_001959_020--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_001959_020--Hb_000949_010 Hb_003581_170 Hb_003581_170 Hb_001959_020--Hb_003581_170 Hb_000661_200 Hb_000661_200 Hb_001959_020--Hb_000661_200 Hb_000069_410 Hb_000069_410 Hb_001959_020--Hb_000069_410 Hb_001959_020--Hb_128743_010 Hb_001673_050 Hb_001673_050 Hb_001668_010--Hb_001673_050 Hb_134362_010 Hb_134362_010 Hb_001668_010--Hb_134362_010 Hb_005542_140 Hb_005542_140 Hb_001668_010--Hb_005542_140 Hb_000635_030 Hb_000635_030 Hb_001668_010--Hb_000635_030 Hb_027472_220 Hb_027472_220 Hb_001668_010--Hb_027472_220 Hb_000011_100 Hb_000011_100 Hb_001668_010--Hb_000011_100 Hb_000406_230 Hb_000406_230 Hb_007558_070--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_007558_070--Hb_000191_130 Hb_023344_010 Hb_023344_010 Hb_007558_070--Hb_023344_010 Hb_000398_020 Hb_000398_020 Hb_007558_070--Hb_000398_020 Hb_000917_160 Hb_000917_160 Hb_007558_070--Hb_000917_160 Hb_000010_360 Hb_000010_360 Hb_007558_070--Hb_000010_360 Hb_023226_080--Hb_005542_140 Hb_023226_080--Hb_000176_100 Hb_023226_080--Hb_000069_410 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_009615_170 Hb_009615_170 Hb_023226_080--Hb_009615_170 Hb_004108_100 Hb_004108_100 Hb_128743_010--Hb_004108_100 Hb_000025_320 Hb_000025_320 Hb_128743_010--Hb_000025_320 Hb_144831_010 Hb_144831_010 Hb_128743_010--Hb_144831_010 Hb_000960_100 Hb_000960_100 Hb_128743_010--Hb_000960_100 Hb_128743_010--Hb_000661_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4097 32.725 11.6462 17.8514 35.2555 22.0388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6561 14.1706 12.2242 22.4898 17.4392

CAGE analysis