Hb_097218_020

Information

Type -
Description -
Location Contig97218: 13350-16523
Sequence    

Annotation

kegg
ID rcu:RCOM_0866490
description replication factor A 1, rfa1, putative
nr
ID XP_012070498.1
description PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
swissprot
ID Q9FHJ6
description Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RPA1C PE=3 SV=1
trembl
ID A0A067KU82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02766 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 70 kda dna-binding subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097218_020 0.0 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
2 Hb_001117_120 0.1526878012 - - chloride channel clc, putative [Ricinus communis]
3 Hb_002217_520 0.1880345774 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
4 Hb_153269_010 0.1980627894 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
5 Hb_001221_560 0.199432354 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
6 Hb_003673_040 0.2030960201 - - dynamin family protein [Populus trichocarpa]
7 Hb_021079_010 0.2082631512 - - PREDICTED: histone H2B-like [Populus euphratica]
8 Hb_000175_190 0.2150888473 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
9 Hb_001376_060 0.2168678859 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
10 Hb_027298_030 0.2225548004 - - PREDICTED: histone H1-like [Jatropha curcas]
11 Hb_000318_080 0.2244475393 - - PREDICTED: la-related protein 6C [Jatropha curcas]
12 Hb_003040_040 0.2250655954 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
13 Hb_003462_160 0.2271889379 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
14 Hb_003181_060 0.22985246 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
15 Hb_000139_470 0.232184314 - - Dual specificity protein phosphatase, putative [Ricinus communis]
16 Hb_000438_140 0.2360771355 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
17 Hb_088274_010 0.2363894213 - - PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
18 Hb_001975_040 0.2384437434 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
19 Hb_000723_340 0.2410230242 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
20 Hb_012725_120 0.2412735796 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_097218_020 Hb_097218_020 Hb_001117_120 Hb_001117_120 Hb_097218_020--Hb_001117_120 Hb_002217_520 Hb_002217_520 Hb_097218_020--Hb_002217_520 Hb_153269_010 Hb_153269_010 Hb_097218_020--Hb_153269_010 Hb_001221_560 Hb_001221_560 Hb_097218_020--Hb_001221_560 Hb_003673_040 Hb_003673_040 Hb_097218_020--Hb_003673_040 Hb_021079_010 Hb_021079_010 Hb_097218_020--Hb_021079_010 Hb_001117_120--Hb_002217_520 Hb_003687_030 Hb_003687_030 Hb_001117_120--Hb_003687_030 Hb_062785_010 Hb_062785_010 Hb_001117_120--Hb_062785_010 Hb_000318_080 Hb_000318_080 Hb_001117_120--Hb_000318_080 Hb_139138_010 Hb_139138_010 Hb_001117_120--Hb_139138_010 Hb_002217_520--Hb_062785_010 Hb_002094_070 Hb_002094_070 Hb_002217_520--Hb_002094_070 Hb_011724_030 Hb_011724_030 Hb_002217_520--Hb_011724_030 Hb_010672_030 Hb_010672_030 Hb_002217_520--Hb_010672_030 Hb_001376_060 Hb_001376_060 Hb_153269_010--Hb_001376_060 Hb_003181_060 Hb_003181_060 Hb_153269_010--Hb_003181_060 Hb_000018_140 Hb_000018_140 Hb_153269_010--Hb_000018_140 Hb_153269_010--Hb_003673_040 Hb_027298_030 Hb_027298_030 Hb_153269_010--Hb_027298_030 Hb_001862_120 Hb_001862_120 Hb_001221_560--Hb_001862_120 Hb_000270_330 Hb_000270_330 Hb_001221_560--Hb_000270_330 Hb_006384_010 Hb_006384_010 Hb_001221_560--Hb_006384_010 Hb_012506_070 Hb_012506_070 Hb_001221_560--Hb_012506_070 Hb_000676_140 Hb_000676_140 Hb_001221_560--Hb_000676_140 Hb_116420_010 Hb_116420_010 Hb_001221_560--Hb_116420_010 Hb_003673_040--Hb_021079_010 Hb_000330_030 Hb_000330_030 Hb_003673_040--Hb_000330_030 Hb_003673_040--Hb_027298_030 Hb_003673_040--Hb_003181_060 Hb_002631_300 Hb_002631_300 Hb_003673_040--Hb_002631_300 Hb_000392_550 Hb_000392_550 Hb_021079_010--Hb_000392_550 Hb_021079_010--Hb_027298_030 Hb_002876_020 Hb_002876_020 Hb_021079_010--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_021079_010--Hb_003106_100 Hb_021079_010--Hb_003181_060 Hb_000210_060 Hb_000210_060 Hb_021079_010--Hb_000210_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.043751 0.376136 0.540708 0.568787 0.00836115 0.0803268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.777404 1.05932 0 0.450503 0.696643

CAGE analysis