Hb_097634_010

Information

Type -
Description -
Location Contig97634: 641-1936
Sequence    

Annotation

kegg
ID rcu:RCOM_0782170
description UDP-glucuronate 5-epimerase, putative (EC:5.1.3.12)
nr
ID XP_012071600.1
description PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
swissprot
ID Q9M0B6
description UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1
trembl
ID A0A067KRD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04104 PE=4 SV=1
Gene Ontology
ID GO:0005768
description udp-glucuronate 4-epimerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097634_010 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
2 Hb_000892_030 0.1158570914 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_010417_110 0.118385059 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010174_200 0.1240459163 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
5 Hb_000567_110 0.1251489273 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
6 Hb_004109_110 0.1267232594 - - dioxygenase family protein [Populus trichocarpa]
7 Hb_000638_180 0.1269162436 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
8 Hb_002725_080 0.1283645561 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_024650_010 0.1320285504 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
10 Hb_003209_090 0.1339297618 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
11 Hb_001269_240 0.1375242176 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
12 Hb_000024_020 0.1380569047 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
13 Hb_013405_100 0.1384901365 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
14 Hb_000742_260 0.1399010229 - - hypothetical protein RCOM_1336320 [Ricinus communis]
15 Hb_002004_010 0.1402050685 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
16 Hb_000047_010 0.1402651504 - - PREDICTED: expansin-like A1 [Jatropha curcas]
17 Hb_007441_360 0.1403098149 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
18 Hb_026050_010 0.1412629353 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_005618_010 0.1415997625 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
20 Hb_009557_080 0.1420121745 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]

Gene co-expression network

sample Hb_097634_010 Hb_097634_010 Hb_000892_030 Hb_000892_030 Hb_097634_010--Hb_000892_030 Hb_010417_110 Hb_010417_110 Hb_097634_010--Hb_010417_110 Hb_010174_200 Hb_010174_200 Hb_097634_010--Hb_010174_200 Hb_000567_110 Hb_000567_110 Hb_097634_010--Hb_000567_110 Hb_004109_110 Hb_004109_110 Hb_097634_010--Hb_004109_110 Hb_000638_180 Hb_000638_180 Hb_097634_010--Hb_000638_180 Hb_000047_010 Hb_000047_010 Hb_000892_030--Hb_000047_010 Hb_094437_050 Hb_094437_050 Hb_000892_030--Hb_094437_050 Hb_005725_280 Hb_005725_280 Hb_000892_030--Hb_005725_280 Hb_005694_150 Hb_005694_150 Hb_000892_030--Hb_005694_150 Hb_000365_340 Hb_000365_340 Hb_000892_030--Hb_000365_340 Hb_002400_040 Hb_002400_040 Hb_000892_030--Hb_002400_040 Hb_002725_080 Hb_002725_080 Hb_010417_110--Hb_002725_080 Hb_009557_080 Hb_009557_080 Hb_010417_110--Hb_009557_080 Hb_004450_030 Hb_004450_030 Hb_010417_110--Hb_004450_030 Hb_006002_020 Hb_006002_020 Hb_010417_110--Hb_006002_020 Hb_000375_150 Hb_000375_150 Hb_010417_110--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_010417_110--Hb_005618_010 Hb_026050_010 Hb_026050_010 Hb_010174_200--Hb_026050_010 Hb_081864_010 Hb_081864_010 Hb_010174_200--Hb_081864_010 Hb_007441_360 Hb_007441_360 Hb_010174_200--Hb_007441_360 Hb_173107_020 Hb_173107_020 Hb_010174_200--Hb_173107_020 Hb_114733_010 Hb_114733_010 Hb_010174_200--Hb_114733_010 Hb_009771_040 Hb_009771_040 Hb_010174_200--Hb_009771_040 Hb_000024_020 Hb_000024_020 Hb_000567_110--Hb_000024_020 Hb_006573_280 Hb_006573_280 Hb_000567_110--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_000567_110--Hb_004724_300 Hb_003633_150 Hb_003633_150 Hb_000567_110--Hb_003633_150 Hb_004112_050 Hb_004112_050 Hb_000567_110--Hb_004112_050 Hb_000567_110--Hb_005694_150 Hb_006153_020 Hb_006153_020 Hb_004109_110--Hb_006153_020 Hb_004109_110--Hb_000047_010 Hb_004109_110--Hb_006002_020 Hb_021576_160 Hb_021576_160 Hb_004109_110--Hb_021576_160 Hb_001518_030 Hb_001518_030 Hb_004109_110--Hb_001518_030 Hb_024650_010 Hb_024650_010 Hb_004109_110--Hb_024650_010 Hb_000732_100 Hb_000732_100 Hb_000638_180--Hb_000732_100 Hb_000638_180--Hb_114733_010 Hb_007292_050 Hb_007292_050 Hb_000638_180--Hb_007292_050 Hb_004241_200 Hb_004241_200 Hb_000638_180--Hb_004241_200 Hb_000742_260 Hb_000742_260 Hb_000638_180--Hb_000742_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150026 104.173 43.018 92.5042 0.202931 0.231064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29592 5.41762 2.12112 9.29841 44.0636

CAGE analysis