Hb_097783_010

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig97783: 3300-8861
Sequence    

Annotation

kegg
ID rcu:RCOM_1203530
description transcription factor, putative
nr
ID XP_002530298.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O22864
description Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1
trembl
ID B9SWC9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1203530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097783_010 0.0 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
2 Hb_000343_170 0.163875623 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
3 Hb_133648_010 0.1929818503 - - -
4 Hb_000085_120 0.1957279368 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
5 Hb_003641_010 0.2076474462 - - Pectinesterase-3 precursor, putative [Ricinus communis]
6 Hb_002820_130 0.210881268 - - -
7 Hb_007545_200 0.2109188171 - - Pectinesterase-3 precursor, putative [Ricinus communis]
8 Hb_000562_010 0.2312923251 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
9 Hb_072290_010 0.234263358 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
10 Hb_000893_010 0.2381427084 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
11 Hb_000320_250 0.2444722185 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
12 Hb_012640_010 0.2454491329 - - -
13 Hb_158296_010 0.2461771235 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
14 Hb_104169_010 0.2468813338 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_015085_010 0.2492706217 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
16 Hb_000959_180 0.2498744748 - - hypothetical protein JCGZ_09448 [Jatropha curcas]
17 Hb_003906_030 0.249881933 - - mads box protein, putative [Ricinus communis]
18 Hb_005183_020 0.2573312704 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
19 Hb_001810_050 0.2602348499 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001584_040 0.2622915876 - - PREDICTED: uncharacterized protein LOC105125166 [Populus euphratica]

Gene co-expression network

sample Hb_097783_010 Hb_097783_010 Hb_000343_170 Hb_000343_170 Hb_097783_010--Hb_000343_170 Hb_133648_010 Hb_133648_010 Hb_097783_010--Hb_133648_010 Hb_000085_120 Hb_000085_120 Hb_097783_010--Hb_000085_120 Hb_003641_010 Hb_003641_010 Hb_097783_010--Hb_003641_010 Hb_002820_130 Hb_002820_130 Hb_097783_010--Hb_002820_130 Hb_007545_200 Hb_007545_200 Hb_097783_010--Hb_007545_200 Hb_000343_170--Hb_007545_200 Hb_012640_010 Hb_012640_010 Hb_000343_170--Hb_012640_010 Hb_001810_050 Hb_001810_050 Hb_000343_170--Hb_001810_050 Hb_000172_260 Hb_000172_260 Hb_000343_170--Hb_000172_260 Hb_045786_010 Hb_045786_010 Hb_000343_170--Hb_045786_010 Hb_158296_010 Hb_158296_010 Hb_133648_010--Hb_158296_010 Hb_048183_010 Hb_048183_010 Hb_133648_010--Hb_048183_010 Hb_007416_080 Hb_007416_080 Hb_133648_010--Hb_007416_080 Hb_000562_010 Hb_000562_010 Hb_133648_010--Hb_000562_010 Hb_072290_010 Hb_072290_010 Hb_133648_010--Hb_072290_010 Hb_000085_120--Hb_003641_010 Hb_005183_090 Hb_005183_090 Hb_000085_120--Hb_005183_090 Hb_015085_010 Hb_015085_010 Hb_000085_120--Hb_015085_010 Hb_125152_010 Hb_125152_010 Hb_000085_120--Hb_125152_010 Hb_000048_120 Hb_000048_120 Hb_000085_120--Hb_000048_120 Hb_009501_010 Hb_009501_010 Hb_000085_120--Hb_009501_010 Hb_005263_010 Hb_005263_010 Hb_003641_010--Hb_005263_010 Hb_000025_220 Hb_000025_220 Hb_003641_010--Hb_000025_220 Hb_005368_030 Hb_005368_030 Hb_003641_010--Hb_005368_030 Hb_000733_260 Hb_000733_260 Hb_003641_010--Hb_000733_260 Hb_002820_130--Hb_007545_200 Hb_104169_010 Hb_104169_010 Hb_002820_130--Hb_104169_010 Hb_002820_130--Hb_072290_010 Hb_002820_130--Hb_133648_010 Hb_011381_090 Hb_011381_090 Hb_002820_130--Hb_011381_090 Hb_119600_020 Hb_119600_020 Hb_007545_200--Hb_119600_020 Hb_052802_010 Hb_052802_010 Hb_007545_200--Hb_052802_010 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_020805_160 Hb_020805_160 Hb_007545_200--Hb_020805_160 Hb_007545_200--Hb_001810_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0157055 0.0449485 0.00469767 0.27579 0 0.0388107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis