Hb_097968_010

Information

Type -
Description -
Location Contig97968: 44-508
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001143mg
description hypothetical protein
nr
ID XP_007214612.1
description hypothetical protein PRUPE_ppa001143mg [Prunus persica]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID M5WRG4
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001143mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64329: 399-532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097968_010 0.0 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
2 Hb_004103_030 0.1688877857 - - conserved hypothetical protein [Ricinus communis]
3 Hb_015707_010 0.2096976337 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
4 Hb_025457_010 0.2479667244 - - -
5 Hb_002028_100 0.2538952285 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
6 Hb_024505_050 0.2569735768 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
7 Hb_009421_010 0.2768066555 - - -
8 Hb_002733_030 0.2798594504 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
9 Hb_001506_010 0.282425001 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
10 Hb_002232_450 0.2857093145 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
11 Hb_012522_010 0.288048739 - - hypothetical protein VITISV_003261 [Vitis vinifera]
12 Hb_030291_020 0.2964314003 - - PREDICTED: protein argonaute 5 isoform X2 [Jatropha curcas]
13 Hb_002374_430 0.2984542381 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004871_070 0.2999189052 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
15 Hb_002947_020 0.3017488664 - - PREDICTED: uncharacterized protein LOC103330439 [Prunus mume]
16 Hb_000000_100 0.3021204868 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
17 Hb_002131_040 0.3096794714 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
18 Hb_090497_010 0.3124592544 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
19 Hb_003881_050 0.3157566852 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
20 Hb_000101_160 0.3158749518 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_097968_010 Hb_097968_010 Hb_004103_030 Hb_004103_030 Hb_097968_010--Hb_004103_030 Hb_015707_010 Hb_015707_010 Hb_097968_010--Hb_015707_010 Hb_025457_010 Hb_025457_010 Hb_097968_010--Hb_025457_010 Hb_002028_100 Hb_002028_100 Hb_097968_010--Hb_002028_100 Hb_024505_050 Hb_024505_050 Hb_097968_010--Hb_024505_050 Hb_009421_010 Hb_009421_010 Hb_097968_010--Hb_009421_010 Hb_183443_010 Hb_183443_010 Hb_004103_030--Hb_183443_010 Hb_000512_070 Hb_000512_070 Hb_004103_030--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004103_030--Hb_001242_090 Hb_000000_100 Hb_000000_100 Hb_004103_030--Hb_000000_100 Hb_007590_070 Hb_007590_070 Hb_004103_030--Hb_007590_070 Hb_015707_010--Hb_002028_100 Hb_003881_050 Hb_003881_050 Hb_015707_010--Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_015707_010--Hb_038011_010 Hb_099864_010 Hb_099864_010 Hb_015707_010--Hb_099864_010 Hb_090497_010 Hb_090497_010 Hb_015707_010--Hb_090497_010 Hb_002733_030 Hb_002733_030 Hb_025457_010--Hb_002733_030 Hb_025457_010--Hb_009421_010 Hb_002232_450 Hb_002232_450 Hb_025457_010--Hb_002232_450 Hb_002686_380 Hb_002686_380 Hb_025457_010--Hb_002686_380 Hb_008370_010 Hb_008370_010 Hb_025457_010--Hb_008370_010 Hb_002028_100--Hb_002733_030 Hb_002028_100--Hb_002232_450 Hb_000590_040 Hb_000590_040 Hb_002028_100--Hb_000590_040 Hb_002028_100--Hb_025457_010 Hb_001329_240 Hb_001329_240 Hb_024505_050--Hb_001329_240 Hb_006816_170 Hb_006816_170 Hb_024505_050--Hb_006816_170 Hb_002489_010 Hb_002489_010 Hb_024505_050--Hb_002489_010 Hb_034299_040 Hb_034299_040 Hb_024505_050--Hb_034299_040 Hb_002131_040 Hb_002131_040 Hb_024505_050--Hb_002131_040 Hb_004342_030 Hb_004342_030 Hb_024505_050--Hb_004342_030 Hb_009421_010--Hb_008370_010 Hb_010142_080 Hb_010142_080 Hb_009421_010--Hb_010142_080 Hb_005532_010 Hb_005532_010 Hb_009421_010--Hb_005532_010 Hb_013429_020 Hb_013429_020 Hb_009421_010--Hb_013429_020 Hb_020580_010 Hb_020580_010 Hb_009421_010--Hb_020580_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.700665 0.202036 0.0499226 0.276864 0.885361 1.06544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.38284 1.8458 0

CAGE analysis