Hb_098315_120

Information

Type -
Description -
Location Contig98315: 89218-93276
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64510: 93237-93415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_120 0.0 - - -
2 Hb_008847_020 0.1069436273 - - 40S ribosomal protein S17C [Hevea brasiliensis]
3 Hb_001629_100 0.1130778368 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
4 Hb_130291_010 0.1157694137 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
5 Hb_000184_050 0.1182247492 - - NOI, putative [Ricinus communis]
6 Hb_012265_010 0.1232436824 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
7 Hb_011139_020 0.126694586 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
8 Hb_000580_080 0.1291935036 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
9 Hb_000120_590 0.129269551 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
10 Hb_001754_010 0.1295118721 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_000061_330 0.131451334 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
12 Hb_000318_380 0.1324536106 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
13 Hb_000479_180 0.1327656489 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012515_010 0.1352091269 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
15 Hb_000199_070 0.1354901412 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003086_100 0.1359217794 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
17 Hb_000608_420 0.1370874521 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
18 Hb_004116_040 0.1372732869 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
19 Hb_004595_020 0.1376664449 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
20 Hb_010883_150 0.1398960303 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_098315_120 Hb_098315_120 Hb_008847_020 Hb_008847_020 Hb_098315_120--Hb_008847_020 Hb_001629_100 Hb_001629_100 Hb_098315_120--Hb_001629_100 Hb_130291_010 Hb_130291_010 Hb_098315_120--Hb_130291_010 Hb_000184_050 Hb_000184_050 Hb_098315_120--Hb_000184_050 Hb_012265_010 Hb_012265_010 Hb_098315_120--Hb_012265_010 Hb_011139_020 Hb_011139_020 Hb_098315_120--Hb_011139_020 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_010883_150 Hb_010883_150 Hb_008847_020--Hb_010883_150 Hb_000199_070 Hb_000199_070 Hb_008847_020--Hb_000199_070 Hb_008847_020--Hb_000184_050 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_000526_150 Hb_000526_150 Hb_008847_020--Hb_000526_150 Hb_001754_010 Hb_001754_010 Hb_001629_100--Hb_001754_010 Hb_001008_010 Hb_001008_010 Hb_001629_100--Hb_001008_010 Hb_001629_100--Hb_130291_010 Hb_000120_590 Hb_000120_590 Hb_001629_100--Hb_000120_590 Hb_100777_010 Hb_100777_010 Hb_001629_100--Hb_100777_010 Hb_130291_010--Hb_000184_050 Hb_130291_010--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_130291_010--Hb_000199_070 Hb_000975_110 Hb_000975_110 Hb_130291_010--Hb_000975_110 Hb_000815_260 Hb_000815_260 Hb_000184_050--Hb_000815_260 Hb_003683_040 Hb_003683_040 Hb_000184_050--Hb_003683_040 Hb_000196_050 Hb_000196_050 Hb_000184_050--Hb_000196_050 Hb_000184_050--Hb_010883_150 Hb_003086_100 Hb_003086_100 Hb_012265_010--Hb_003086_100 Hb_012265_010--Hb_001433_050 Hb_148930_010 Hb_148930_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030 Hb_000152_430 Hb_000152_430 Hb_011139_020--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_025193_050 Hb_025193_050 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37282 0.684337 0.302674 3.34537 7.30366 12.1507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8711 17.919 6.19394 7.65685 0.960475

CAGE analysis