Hb_098466_010

Information

Type -
Description -
Location Contig98466: 11-538
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012080767.1
description PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098466_010 0.0 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
2 Hb_137153_010 0.1756110837 - - -
3 Hb_041774_010 0.1888568281 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_172112_010 0.2303456489 - - hypothetical protein JCGZ_26322 [Jatropha curcas]
5 Hb_001767_020 0.254649259 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
6 Hb_005656_060 0.2710623615 - - -
7 Hb_023323_010 0.2868224007 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
8 Hb_010620_010 0.2906683584 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
9 Hb_010317_020 0.2938081412 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
10 Hb_000012_300 0.2955539989 - - -
11 Hb_009973_020 0.3052827299 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
12 Hb_005867_080 0.3099598579 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
13 Hb_058884_010 0.311426121 - - PREDICTED: barwin-like [Jatropha curcas]
14 Hb_001678_020 0.3142153315 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
15 Hb_005989_010 0.3259119467 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
16 Hb_004650_020 0.3289513537 - - -
17 Hb_002890_230 0.3320452085 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
18 Hb_000322_110 0.3322463465 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
19 Hb_003073_130 0.3335207164 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
20 Hb_159555_010 0.3393464992 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]

Gene co-expression network

sample Hb_098466_010 Hb_098466_010 Hb_137153_010 Hb_137153_010 Hb_098466_010--Hb_137153_010 Hb_041774_010 Hb_041774_010 Hb_098466_010--Hb_041774_010 Hb_172112_010 Hb_172112_010 Hb_098466_010--Hb_172112_010 Hb_001767_020 Hb_001767_020 Hb_098466_010--Hb_001767_020 Hb_005656_060 Hb_005656_060 Hb_098466_010--Hb_005656_060 Hb_023323_010 Hb_023323_010 Hb_098466_010--Hb_023323_010 Hb_137153_010--Hb_172112_010 Hb_137153_010--Hb_041774_010 Hb_128287_010 Hb_128287_010 Hb_137153_010--Hb_128287_010 Hb_108404_010 Hb_108404_010 Hb_137153_010--Hb_108404_010 Hb_000204_180 Hb_000204_180 Hb_137153_010--Hb_000204_180 Hb_041774_010--Hb_001767_020 Hb_003073_130 Hb_003073_130 Hb_041774_010--Hb_003073_130 Hb_001668_030 Hb_001668_030 Hb_041774_010--Hb_001668_030 Hb_058884_010 Hb_058884_010 Hb_041774_010--Hb_058884_010 Hb_005867_080 Hb_005867_080 Hb_041774_010--Hb_005867_080 Hb_001650_010 Hb_001650_010 Hb_172112_010--Hb_001650_010 Hb_178607_010 Hb_178607_010 Hb_172112_010--Hb_178607_010 Hb_172112_010--Hb_005656_060 Hb_000060_120 Hb_000060_120 Hb_172112_010--Hb_000060_120 Hb_004460_020 Hb_004460_020 Hb_001767_020--Hb_004460_020 Hb_001767_020--Hb_005867_080 Hb_001767_020--Hb_001668_030 Hb_001775_040 Hb_001775_040 Hb_001767_020--Hb_001775_040 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_000457_160 Hb_000457_160 Hb_005656_060--Hb_000457_160 Hb_005656_060--Hb_005867_080 Hb_022288_020 Hb_022288_020 Hb_005656_060--Hb_022288_020 Hb_005656_060--Hb_041774_010 Hb_005656_060--Hb_001767_020 Hb_010317_030 Hb_010317_030 Hb_005656_060--Hb_010317_030 Hb_005989_010 Hb_005989_010 Hb_023323_010--Hb_005989_010 Hb_009973_020 Hb_009973_020 Hb_023323_010--Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_023323_010--Hb_047661_010 Hb_001678_020 Hb_001678_020 Hb_023323_010--Hb_001678_020 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_023323_010--Hb_005656_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0812086 0 0 0 0.675366 0.600622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.389682 0 0

CAGE analysis