Hb_098533_010

Information

Type -
Description -
Location Contig98533: 4764-8818
Sequence    

Annotation

kegg
ID rcu:RCOM_0852530
description hypothetical protein
nr
ID XP_010100927.1
description hypothetical protein L484_003492 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9T258
description Uncharacterized protein OS=Morus notabilis GN=L484_003492 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64646: 4666-5263 , PASA_asmbl_64648: 6280-7300 , PASA_asmbl_64649: 6596-6834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098533_010 0.0 - - hypothetical protein L484_003492 [Morus notabilis]
2 Hb_009803_020 0.0874201116 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
3 Hb_007229_050 0.0889124442 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
4 Hb_007317_020 0.1005680381 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
5 Hb_006185_030 0.1058778863 - - threonine synthase, putative [Ricinus communis]
6 Hb_001473_170 0.108635362 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_009535_030 0.1115885564 - - CP2 [Hevea brasiliensis]
8 Hb_012053_020 0.1130545491 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
9 Hb_001235_130 0.1154144117 - - -
10 Hb_001040_150 0.1159522712 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000922_260 0.1195842191 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
12 Hb_029584_100 0.1218680813 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
13 Hb_000601_040 0.1223216092 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
14 Hb_014497_060 0.125082803 - - phosphofructokinase, putative [Ricinus communis]
15 Hb_000157_140 0.1254879404 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_005854_040 0.1269959693 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000625_030 0.1279441256 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
18 Hb_009193_010 0.1295861345 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
19 Hb_011174_080 0.130093878 - - PREDICTED: sulfite oxidase [Jatropha curcas]
20 Hb_002026_070 0.1304155094 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_098533_010 Hb_098533_010 Hb_009803_020 Hb_009803_020 Hb_098533_010--Hb_009803_020 Hb_007229_050 Hb_007229_050 Hb_098533_010--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_006185_030 Hb_006185_030 Hb_098533_010--Hb_006185_030 Hb_001473_170 Hb_001473_170 Hb_098533_010--Hb_001473_170 Hb_009535_030 Hb_009535_030 Hb_098533_010--Hb_009535_030 Hb_009803_020--Hb_006185_030 Hb_001040_150 Hb_001040_150 Hb_009803_020--Hb_001040_150 Hb_009803_020--Hb_007229_050 Hb_000768_150 Hb_000768_150 Hb_009803_020--Hb_000768_150 Hb_000601_040 Hb_000601_040 Hb_009803_020--Hb_000601_040 Hb_007229_050--Hb_006185_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_001235_130 Hb_001235_130 Hb_007229_050--Hb_001235_130 Hb_000157_140 Hb_000157_140 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_005854_040 Hb_005854_040 Hb_007317_020--Hb_005854_040 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_007317_020--Hb_000157_140 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_007317_020--Hb_001473_170 Hb_006185_030--Hb_001040_150 Hb_006185_030--Hb_001235_130 Hb_011174_080 Hb_011174_080 Hb_006185_030--Hb_011174_080 Hb_002311_130 Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_010390_010 Hb_010390_010 Hb_001473_170--Hb_010390_010 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_000494_030 Hb_000494_030 Hb_001473_170--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_001473_170--Hb_004030_060 Hb_007313_040 Hb_007313_040 Hb_001473_170--Hb_007313_040 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_009535_030--Hb_004030_060 Hb_009535_030--Hb_001235_130 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_009535_030--Hb_007229_050 Hb_009535_030--Hb_001473_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0463588 0.1973 0.26963 0.489185 0.0899718 0.0463718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106248 0.0835609 0.0767066 0.588619 0.596647

CAGE analysis