Hb_098709_010

Information

Type -
Description -
Location Contig98709: 5942-15419
Sequence    

Annotation

kegg
ID rcu:RCOM_0605410
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_012079244.1
description PREDICTED: protein argonaute 1 [Jatropha curcas]
swissprot
ID O04379
description Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1
trembl
ID A0A067LLZ7
description Protein argonaute OS=Jatropha curcas GN=JCGZ_17407 PE=3 SV=1
Gene Ontology
ID GO:0003676
description protein argonaute 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64678: 6221-15400
cDNA
(Sanger)
(ID:Location)		 031_E05.ab1: 7367-7525 , 049_A21.ab1: 7388-8099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098709_010 0.0 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
2 Hb_000365_360 0.0555489406 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
3 Hb_001437_040 0.0724478129 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
4 Hb_001369_060 0.0773693935 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
5 Hb_002207_100 0.0774058655 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
6 Hb_033491_010 0.0819649803 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
7 Hb_000700_090 0.0821452731 - - protein with unknown function [Ricinus communis]
8 Hb_118977_020 0.0830807661 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
9 Hb_001804_060 0.084072922 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
10 Hb_017895_050 0.085340323 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
11 Hb_000771_140 0.0856252204 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
12 Hb_003125_040 0.0868581391 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
13 Hb_000317_430 0.0869277835 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
14 Hb_026048_090 0.0872672592 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000035_380 0.0877842763 - - -
16 Hb_006569_020 0.0884675393 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
17 Hb_008016_010 0.0897012772 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
18 Hb_134226_010 0.0922232856 - - 40S ribosomal protein S21e, putative [Ricinus communis]
19 Hb_005245_090 0.0925435967 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
20 Hb_000057_060 0.0936845874 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_098709_010 Hb_098709_010 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_001437_040 Hb_001437_040 Hb_098709_010--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_002215_050 Hb_002215_050 Hb_001369_060--Hb_002215_050 Hb_001369_060--Hb_033491_010 Hb_001804_060 Hb_001804_060 Hb_001369_060--Hb_001804_060 Hb_003638_140 Hb_003638_140 Hb_001369_060--Hb_003638_140 Hb_003638_030 Hb_003638_030 Hb_002207_100--Hb_003638_030 Hb_000172_400 Hb_000172_400 Hb_002207_100--Hb_000172_400 Hb_002207_100--Hb_033491_010 Hb_002207_100--Hb_000365_360 Hb_002207_100--Hb_000035_380 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_033491_010--Hb_002215_050 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
293.78 50.3285 28.3652 41.6729 323.527 434.348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
349.238 276.846 239.305 72.1545 25.8191

CAGE analysis