Hb_098795_030

Information

Type -
Description -
Location Contig98795: 32479-34402
Sequence    

Annotation

kegg
ID vvi:100241107
description metal tolerance protein 1-like
nr
ID XP_002278303.1
description PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
swissprot
ID Q9LXS1
description Metal tolerance protein A2 OS=Arabidopsis thaliana GN=MTPA2 PE=2 SV=2
trembl
ID F6HU94
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64687: 32303-34467
cDNA
(Sanger)
(ID:Location)		 020_K14.ab1: 33044-34467

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098795_030 0.0 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
2 Hb_006615_230 0.0970083818 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_002495_030 0.0984295122 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
4 Hb_003470_110 0.1089244824 - - unnamed protein product [Vitis vinifera]
5 Hb_002097_080 0.113027725 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
6 Hb_001976_020 0.1211902234 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002685_220 0.1257856665 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
8 Hb_003006_080 0.1258161374 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_189003_070 0.1268420843 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
10 Hb_003001_130 0.1321837014 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000236_180 0.1328427748 - - serine hydroxymethyltransferase, putative [Ricinus communis]
12 Hb_134014_010 0.1336706659 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
13 Hb_007590_100 0.1339311027 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
14 Hb_000580_110 0.134479159 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
15 Hb_000979_160 0.135906652 - - hypothetical protein RCOM_0629030 [Ricinus communis]
16 Hb_000603_020 0.1430023144 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
17 Hb_000107_550 0.143655779 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
18 Hb_001119_070 0.1437272726 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
19 Hb_000959_120 0.145917071 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
20 Hb_000236_190 0.1478870141 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_098795_030 Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_098795_030--Hb_006615_230 Hb_002495_030 Hb_002495_030 Hb_098795_030--Hb_002495_030 Hb_003470_110 Hb_003470_110 Hb_098795_030--Hb_003470_110 Hb_002097_080 Hb_002097_080 Hb_098795_030--Hb_002097_080 Hb_001976_020 Hb_001976_020 Hb_098795_030--Hb_001976_020 Hb_002685_220 Hb_002685_220 Hb_098795_030--Hb_002685_220 Hb_134014_010 Hb_134014_010 Hb_006615_230--Hb_134014_010 Hb_189003_070 Hb_189003_070 Hb_006615_230--Hb_189003_070 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_158092_040 Hb_158092_040 Hb_006615_230--Hb_158092_040 Hb_006615_230--Hb_002495_030 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_003052_080 Hb_003052_080 Hb_002495_030--Hb_003052_080 Hb_007590_100 Hb_007590_100 Hb_002495_030--Hb_007590_100 Hb_031089_020 Hb_031089_020 Hb_003470_110--Hb_031089_020 Hb_000236_180 Hb_000236_180 Hb_003470_110--Hb_000236_180 Hb_003470_110--Hb_006615_230 Hb_084147_010 Hb_084147_010 Hb_003470_110--Hb_084147_010 Hb_030565_100 Hb_030565_100 Hb_003470_110--Hb_030565_100 Hb_002097_080--Hb_002685_220 Hb_002097_080--Hb_001976_020 Hb_014361_040 Hb_014361_040 Hb_002097_080--Hb_014361_040 Hb_002685_160 Hb_002685_160 Hb_002097_080--Hb_002685_160 Hb_000028_580 Hb_000028_580 Hb_002097_080--Hb_000028_580 Hb_000979_160 Hb_000979_160 Hb_001976_020--Hb_000979_160 Hb_001976_020--Hb_002685_220 Hb_000959_120 Hb_000959_120 Hb_001976_020--Hb_000959_120 Hb_001976_020--Hb_007590_100 Hb_009222_080 Hb_009222_080 Hb_002685_220--Hb_009222_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002685_220--Hb_002495_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.435714 4.37935 3.58623 17.7769 0.676527 1.27081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.942108 0.598601 0.532705 6.00769 9.72326

CAGE analysis