Hb_098842_010

Information

Type -
Description -
Location Contig98842: 157-1192
Sequence    

Annotation

kegg
ID egr:104429236
description uncharacterized protein At4g02000-like
nr
ID XP_010040423.1
description PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0003676
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098842_010 0.0 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
2 Hb_010997_050 0.0508676674 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
3 Hb_105484_010 0.1134754148 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
4 Hb_000004_140 0.1448320975 - - -
5 Hb_004282_030 0.1626596476 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
6 Hb_076583_010 0.187004748 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
7 Hb_064951_010 0.1921899889 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
8 Hb_086287_020 0.1987972202 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
9 Hb_000962_010 0.2141375316 - - -
10 Hb_000115_270 0.2187991298 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
11 Hb_000563_280 0.219074611 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
12 Hb_010024_010 0.2216247133 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_001241_060 0.2225553735 - - -
14 Hb_022593_060 0.2236286593 - - -
15 Hb_003636_050 0.2263666467 - - PREDICTED: bark storage protein A-like [Populus euphratica]
16 Hb_007761_010 0.2280242098 - - -
17 Hb_128173_010 0.2283278324 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
18 Hb_111332_010 0.2327940587 - - Dihydroneopterin aldolase [Morus notabilis]
19 Hb_006692_050 0.2334325167 - - Chloroplastic lipocalin [Theobroma cacao]
20 Hb_001206_070 0.2337699652 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_098842_010 Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_098842_010--Hb_010997_050 Hb_105484_010 Hb_105484_010 Hb_098842_010--Hb_105484_010 Hb_000004_140 Hb_000004_140 Hb_098842_010--Hb_000004_140 Hb_004282_030 Hb_004282_030 Hb_098842_010--Hb_004282_030 Hb_076583_010 Hb_076583_010 Hb_098842_010--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_098842_010--Hb_064951_010 Hb_010997_050--Hb_105484_010 Hb_010997_050--Hb_000004_140 Hb_010997_050--Hb_076583_010 Hb_010997_050--Hb_064951_010 Hb_010997_050--Hb_004282_030 Hb_000563_280 Hb_000563_280 Hb_105484_010--Hb_000563_280 Hb_000831_040 Hb_000831_040 Hb_105484_010--Hb_000831_040 Hb_182310_010 Hb_182310_010 Hb_105484_010--Hb_182310_010 Hb_165078_010 Hb_165078_010 Hb_105484_010--Hb_165078_010 Hb_000004_140--Hb_004282_030 Hb_000004_140--Hb_076583_010 Hb_128173_010 Hb_128173_010 Hb_000004_140--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_000004_140--Hb_007761_010 Hb_004829_020 Hb_004829_020 Hb_004282_030--Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_004282_030--Hb_012340_040 Hb_124567_010 Hb_124567_010 Hb_004282_030--Hb_124567_010 Hb_076583_010--Hb_064951_010 Hb_009268_110 Hb_009268_110 Hb_076583_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_076583_010--Hb_089491_010 Hb_013727_010 Hb_013727_010 Hb_076583_010--Hb_013727_010 Hb_003529_210 Hb_003529_210 Hb_076583_010--Hb_003529_210 Hb_066784_020 Hb_066784_020 Hb_064951_010--Hb_066784_020 Hb_064951_010--Hb_003529_210 Hb_064951_010--Hb_089491_010 Hb_064951_010--Hb_009268_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0226263 0 0 0 0.021209 0.18464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis