Hb_098852_010

Information

Type -
Description -
Location Contig98852: 3-551
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10220g
description POPTRDRAFT_817251; hypothetical protein
nr
ID XP_012065942.1
description PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9PEN0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s10220g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098852_010 0.0 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
2 Hb_041205_010 0.099781318 - - conserved hypothetical protein [Ricinus communis]
3 Hb_030982_020 0.1220831039 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
4 Hb_132180_010 0.1291701638 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
5 Hb_002078_260 0.1316923171 - - unknown [Populus trichocarpa]
6 Hb_003861_040 0.1368170597 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
7 Hb_000326_090 0.1369230974 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
8 Hb_002259_160 0.1375868674 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
9 Hb_082006_010 0.1388670965 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011214_100 0.1407285428 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
11 Hb_000340_520 0.1417663048 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
12 Hb_000635_070 0.1419619101 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
13 Hb_005694_020 0.1429134943 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
14 Hb_012675_070 0.1433461715 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
15 Hb_067776_010 0.1454380518 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
16 Hb_009270_030 0.147477812 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_000215_200 0.1476380799 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
18 Hb_014834_040 0.1494864963 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
19 Hb_129672_010 0.1519607987 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
20 Hb_130235_010 0.1522907475 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]

Gene co-expression network

sample Hb_098852_010 Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_098852_010--Hb_041205_010 Hb_030982_020 Hb_030982_020 Hb_098852_010--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_098852_010--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_098852_010--Hb_002078_260 Hb_003861_040 Hb_003861_040 Hb_098852_010--Hb_003861_040 Hb_000326_090 Hb_000326_090 Hb_098852_010--Hb_000326_090 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020 Hb_030982_020--Hb_002078_260 Hb_011214_100 Hb_011214_100 Hb_030982_020--Hb_011214_100 Hb_030982_020--Hb_041205_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_132180_010--Hb_002078_260 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_001220_010 Hb_001220_010 Hb_132180_010--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_152554_010 Hb_152554_010 Hb_003861_040--Hb_152554_010 Hb_000162_260 Hb_000162_260 Hb_003861_040--Hb_000162_260 Hb_005367_010 Hb_005367_010 Hb_003861_040--Hb_005367_010 Hb_007441_270 Hb_007441_270 Hb_003861_040--Hb_007441_270 Hb_000812_040 Hb_000812_040 Hb_003861_040--Hb_000812_040 Hb_000083_170 Hb_000083_170 Hb_000326_090--Hb_000083_170 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_005867_020 Hb_005867_020 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8476 21.1212 16.6849 137.11 20.6249 157.527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.7197 123.66 77.8573 82.3422 12.266

CAGE analysis