Hb_099069_010

Information

Type -
Description -
Location Contig99069: 316-1327
Sequence    

Annotation

kegg
ID rcu:RCOM_0965030
description s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase, putative (EC:2.1.1.41)
nr
ID AAB62812.1
description S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
swissprot
ID Q9LM02
description Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=1 SV=1
trembl
ID O24328
description Methyltransferase OS=Ricinus communis PE=2 SV=1
Gene Ontology
ID GO:0016740
description cycloartenol-c-24-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099069_010 0.0 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
2 Hb_111648_010 0.1310631102 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
3 Hb_145226_010 0.1406574005 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
4 Hb_000157_040 0.1503142632 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
5 Hb_000078_010 0.1584265689 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
6 Hb_007810_030 0.1637273473 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
7 Hb_000270_410 0.1778336052 - - -
8 Hb_000563_560 0.1786200342 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
9 Hb_001741_090 0.1795923934 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
10 Hb_012423_050 0.1810438601 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
11 Hb_116264_010 0.1823340264 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
12 Hb_000742_270 0.184496484 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
13 Hb_148121_010 0.1854466784 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000032_040 0.1866485505 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
15 Hb_001514_180 0.186809984 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
16 Hb_004324_050 0.187532182 - - PREDICTED: spermine synthase [Jatropha curcas]
17 Hb_002000_110 0.1899272685 - - ASR-like protein 2 [Hevea brasiliensis]
18 Hb_000190_110 0.1903666112 - - -
19 Hb_002685_090 0.1906017834 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
20 Hb_001213_120 0.1911162056 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]

Gene co-expression network

sample Hb_099069_010 Hb_099069_010 Hb_111648_010 Hb_111648_010 Hb_099069_010--Hb_111648_010 Hb_145226_010 Hb_145226_010 Hb_099069_010--Hb_145226_010 Hb_000157_040 Hb_000157_040 Hb_099069_010--Hb_000157_040 Hb_000078_010 Hb_000078_010 Hb_099069_010--Hb_000078_010 Hb_007810_030 Hb_007810_030 Hb_099069_010--Hb_007810_030 Hb_000270_410 Hb_000270_410 Hb_099069_010--Hb_000270_410 Hb_001514_180 Hb_001514_180 Hb_111648_010--Hb_001514_180 Hb_116264_010 Hb_116264_010 Hb_111648_010--Hb_116264_010 Hb_000041_070 Hb_000041_070 Hb_111648_010--Hb_000041_070 Hb_111648_010--Hb_000078_010 Hb_024505_040 Hb_024505_040 Hb_111648_010--Hb_024505_040 Hb_000444_030 Hb_000444_030 Hb_111648_010--Hb_000444_030 Hb_145226_010--Hb_111648_010 Hb_145226_010--Hb_000041_070 Hb_004206_030 Hb_004206_030 Hb_145226_010--Hb_004206_030 Hb_145226_010--Hb_000078_010 Hb_145226_010--Hb_001514_180 Hb_000103_110 Hb_000103_110 Hb_000157_040--Hb_000103_110 Hb_000157_040--Hb_000270_410 Hb_004324_050 Hb_004324_050 Hb_000157_040--Hb_004324_050 Hb_002685_090 Hb_002685_090 Hb_000157_040--Hb_002685_090 Hb_000563_560 Hb_000563_560 Hb_000157_040--Hb_000563_560 Hb_000078_010--Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_000078_010--Hb_015934_020 Hb_000367_280 Hb_000367_280 Hb_000078_010--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_000078_010--Hb_001213_120 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_007810_030--Hb_015934_020 Hb_007810_030--Hb_000367_280 Hb_011245_020 Hb_011245_020 Hb_007810_030--Hb_011245_020 Hb_007810_030--Hb_001213_120 Hb_000032_220 Hb_000032_220 Hb_007810_030--Hb_000032_220 Hb_000270_410--Hb_002685_090 Hb_000270_410--Hb_000041_070 Hb_000270_410--Hb_004206_030 Hb_002000_110 Hb_002000_110 Hb_000270_410--Hb_002000_110 Hb_012725_110 Hb_012725_110 Hb_000270_410--Hb_012725_110 Hb_000032_040 Hb_000032_040 Hb_000270_410--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
193.94 8.6393 26.483 78.5989 102.877 631.753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1546.07 744.058 1330.77 82.8648 6.16775

CAGE analysis